Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p09
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496...    69   5e-13
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31...    66   4e-12
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972...    66   4e-12

>05_04_0058 +
           17548945-17548947,17549234-17549281,17549618-17549695,
           17549952-17550132,17550223-17550320,17550827-17551258
          Length = 279

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 34/64 (53%), Positives = 39/64 (60%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA T  EV  I+ Q  + VDGKVRT  TY  G  D VSI K    F ++YD KG
Sbjct: 64  LRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKG 123

Query: 14  RFTI 3
           RF +
Sbjct: 124 RFRL 127


>02_01_0047 -
           316960-317397,317647-317744,317837-318017,318122-318199,
           319023-319025
          Length = 265

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 31/64 (48%), Positives = 39/64 (60%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           +RNR KYA T  EV  I+ Q  + VDGKVRT  TY  G  D +SI K    + ++YD KG
Sbjct: 48  IRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKG 107

Query: 14  RFTI 3
           RF +
Sbjct: 108 RFRL 111


>01_03_0277 +
           14496298-14496300,14496875-14496952,14497061-14497241,
           14497348-14497445,14497542-14497979
          Length = 265

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 31/64 (48%), Positives = 39/64 (60%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           +RNR KYA T  EV  I+ Q  + VDGKVRT  TY  G  D +SI K    + ++YD KG
Sbjct: 48  IRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKG 107

Query: 14  RFTI 3
           RF +
Sbjct: 108 RFRL 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,242
Number of Sequences: 37544
Number of extensions: 16321
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)