Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p09
(195 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M58458-1|AAA63255.1| 263|Homo sapiens ribosomal protein S4X iso... 81 8e-16
M22146-1|AAA36597.1| 244|Homo sapiens protein ( Human scar prot... 81 8e-16
CR456735-1|CAG33016.1| 263|Homo sapiens RPS4X protein. 81 8e-16
BC100904-1|AAI00905.1| 263|Homo sapiens RPS4X protein protein. 81 8e-16
BC100903-1|AAI00904.1| 263|Homo sapiens RPS4X protein protein. 81 8e-16
BC071662-1|AAH71662.1| 263|Homo sapiens ribosomal protein S4, X... 81 8e-16
BC007308-1|AAH07308.2| 243|Homo sapiens RPS4X protein protein. 81 8e-16
BC000472-1|AAH00472.1| 263|Homo sapiens ribosomal protein S4, X... 81 8e-16
AK222479-1|BAD96199.1| 263|Homo sapiens ribosomal protein S4, X... 81 8e-16
AF041428-1|AAB96968.1| 263|Homo sapiens ribosomal protein s4 X ... 81 8e-16
M58459-1|AAA63256.1| 263|Homo sapiens ribosomal protein S4Y iso... 79 2e-15
BC100906-1|AAI00907.1| 262|Homo sapiens RPS4Y1 protein protein. 79 2e-15
BC100905-1|AAI00906.1| 263|Homo sapiens ribosomal protein S4, Y... 79 2e-15
BC010286-1|AAH10286.1| 263|Homo sapiens ribosomal protein S4, Y... 79 2e-15
AK222594-1|BAD96314.1| 263|Homo sapiens ribosomal protein S4, Y... 79 2e-15
AF041427-1|AAB96967.1| 263|Homo sapiens ribosomal protein s4 Y ... 79 2e-15
AF497481-1|AAM18074.1| 263|Homo sapiens ribosomal protein S4 pr... 73 1e-13
>M58458-1|AAA63255.1| 263|Homo sapiens ribosomal protein S4X
isoform protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>M22146-1|AAA36597.1| 244|Homo sapiens protein ( Human scar protein
mRNA, complete cds. ).
Length = 244
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 29 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 88
Query: 14 RFTI 3
RF +
Sbjct: 89 RFAV 92
>CR456735-1|CAG33016.1| 263|Homo sapiens RPS4X protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>BC100904-1|AAI00905.1| 263|Homo sapiens RPS4X protein protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>BC100903-1|AAI00904.1| 263|Homo sapiens RPS4X protein protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>BC071662-1|AAH71662.1| 263|Homo sapiens ribosomal protein S4,
X-linked protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>BC007308-1|AAH07308.2| 243|Homo sapiens RPS4X protein protein.
Length = 243
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 28 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 87
Query: 14 RFTI 3
RF +
Sbjct: 88 RFAV 91
>BC000472-1|AAH00472.1| 263|Homo sapiens ribosomal protein S4,
X-linked protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>AK222479-1|BAD96199.1| 263|Homo sapiens ribosomal protein S4,
X-linked X isoform variant protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>AF041428-1|AAB96968.1| 263|Homo sapiens ribosomal protein s4 X
isoform protein.
Length = 263
Score = 80.6 bits (190), Expect = 8e-16
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVRT +TY G D +SI+K F +IYD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>M58459-1|AAA63256.1| 263|Homo sapiens ribosomal protein S4Y
isoform protein.
Length = 263
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVR +TY G D +SIEK F ++YD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>BC100906-1|AAI00907.1| 262|Homo sapiens RPS4Y1 protein protein.
Length = 262
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVR +TY G D +SIEK F ++YD KG
Sbjct: 47 LRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKG 106
Query: 14 RFTI 3
RF +
Sbjct: 107 RFAV 110
>BC100905-1|AAI00906.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 protein.
Length = 263
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVR +TY G D +SIEK F ++YD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>BC010286-1|AAH10286.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 protein.
Length = 263
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVR +TY G D +SIEK F ++YD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>AK222594-1|BAD96314.1| 263|Homo sapiens ribosomal protein S4,
Y-linked 1 Y isoform variant protein.
Length = 263
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVR +TY G D +SIEK F ++YD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>AF041427-1|AAB96967.1| 263|Homo sapiens ribosomal protein s4 Y
isoform protein.
Length = 263
Score = 79.0 bits (186), Expect = 2e-15
Identities = 36/64 (56%), Positives = 43/64 (67%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q IK+DGKVR +TY G D +SIEK F ++YD KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKG 107
Query: 14 RFTI 3
RF +
Sbjct: 108 RFAV 111
>AF497481-1|AAM18074.1| 263|Homo sapiens ribosomal protein S4
protein.
Length = 263
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/64 (51%), Positives = 42/64 (65%)
Frame = -2
Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
LRNR KYA TG+EV KI Q +K+DGKVR +TY G D +SIEK F ++Y+ KG
Sbjct: 48 LRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKG 107
Query: 14 RFTI 3
F +
Sbjct: 108 CFAV 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,800,385
Number of Sequences: 237096
Number of extensions: 106968
Number of successful extensions: 95
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1328536760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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