Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p09
         (195 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...    78   1e-15
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...    78   1e-15
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...    78   1e-15
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...    75   2e-14

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 37/64 (57%), Positives = 43/64 (67%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV KIV Q  +KVDGKVRT  TY  G  D +++EK    F ++YDVKG
Sbjct: 48  LRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKG 107

Query: 14  RFTI 3
           RF I
Sbjct: 108 RFVI 111


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 37/64 (57%), Positives = 43/64 (67%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV KIV Q  +KVDGKVRT  TY  G  D +++EK    F ++YDVKG
Sbjct: 48  LRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKG 107

Query: 14  RFTI 3
           RF I
Sbjct: 108 RFVI 111


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 37/64 (57%), Positives = 43/64 (67%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV KIV Q  +KVDGKVRT  TY  G  D +++EK    F ++YDVKG
Sbjct: 48  LRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKG 107

Query: 14  RFTI 3
           RF I
Sbjct: 108 RFVI 111


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 36/64 (56%), Positives = 42/64 (65%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV KIV Q  +KV GKVRT  TY  G  D +++EK    F ++YDVKG
Sbjct: 48  LRNRLKYALNGAEVTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKG 107

Query: 14  RFTI 3
           RF I
Sbjct: 108 RFVI 111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,063,862
Number of Sequences: 53049
Number of extensions: 27993
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 24,988,368
effective HSP length: 44
effective length of database: 22,654,212
effective search space used: 453084240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)