Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p07
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.029
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 31 0.27
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 30 0.36
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 29 0.83
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 1.4
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 28 1.9
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 4.4
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 4.4
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 27 4.4
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 26 5.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 7.7
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 26 7.7
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 7.7
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 26 7.7
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 26 7.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.029
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -2
Query: 602 LKSGTVRLKPAQKRPQSEIIPKNSTTKNLIADVLVDTINRRRVAMAKSSSEATSNDEGWD 423
LKS V P+ ++ P + N + D L +N+R+ +A+S E +DE WD
Sbjct: 516 LKSRKVSASPSVASTKTSNPPVEAPPSNNLMDALASALNQRKTKVAQSDEEDEDDDE-WD 574
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.7 bits (66), Expect = 0.27
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Frame = -2
Query: 695 LSSAPLQPPLVDLPAEMLPPPAPSLSNVLSELKS---GTVRLKPAQKRPQSEIIPKNSTT 525
LS P P PAE LP P+ S LK RL QK P + +P T
Sbjct: 413 LSLTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVKSLP----T 468
Query: 524 KNLIADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDV 387
+++ DV+++ + V K + + S ++ +NR D+
Sbjct: 469 ESVGIDVVMEPKLQPSVKEKKPTKDLQSPLPSVEEDSSNRDKKTDI 514
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 30.3 bits (65), Expect = 0.36
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 GFSLNTTRLAKSCSSN-LALSIFVCVLFCNKDSTSFKILCAFVFFSSL 330
GFS +L +SC S L ++ +F N + F LCA FFS L
Sbjct: 1217 GFSKREEKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFFSLL 1264
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 29.1 bits (62), Expect = 0.83
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 467 AKSSSEATSNDEGWDDGGNNRPNA-PDVKYVQALFNVFTSSQLYTNDSDEKNTKAHNILN 291
A SSE T EG+ D ++RP++ + A N T+S N++ N + N+
Sbjct: 104 ATVSSEVTHTSEGYADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNNITSPNVRG 163
Query: 290 DVE 282
+++
Sbjct: 164 ELD 166
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -2
Query: 329 SDEKNTKAHNILNDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPL 150
S E+ K + +E LL NI + LQ + +S+N + + +QK L
Sbjct: 405 STEQANKKQKTCSQIEELLLQAELANISASSFSLQLMVIITAISDNLTNDDLLSIQKMSL 464
Query: 149 -FETNRNLFYKSIEDLIFKFRYKDAENHLI 63
F +N ++F Y A + ++
Sbjct: 465 NFTEKKNELQSWSFFILFNICYNKAYSSML 494
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -2
Query: 302 NILNDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFY 123
+I+N L K T ++ +R L D + V + +DS +G ++E RNLFY
Sbjct: 214 HIVNSDSLALMKKGVTIVNTSRGGLIDTKALV----DAIDSGQVGGCAIDVYEGERNLFY 269
Query: 122 KSIEDLIFK 96
K + + + K
Sbjct: 270 KDLSNEVIK 278
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 4.4
Identities = 28/122 (22%), Positives = 53/122 (43%)
Frame = -2
Query: 554 SEIIPKNSTTKNLIADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQ 375
+E + +NS + +LIAD + R M + S + + ++ + +Q
Sbjct: 312 AENVIQNSFSSSLIADGYY-WMGRAYHQMGNNEKAMASYQKAKAADDRHLLSSVGIGQIQ 370
Query: 374 ALFNVFTSSQLYTNDSDEKNTKAHNILNDVESLLQNKTQTNIDKARLLLQDLASRVVLSE 195
L N TS++L E+N L + L + ++ ++ KAR+LL + V S+
Sbjct: 371 ILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAFNLVGSSK 430
Query: 194 NP 189
P
Sbjct: 431 LP 432
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/94 (20%), Positives = 40/94 (42%)
Frame = -2
Query: 512 ADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTN 333
ADV + ++NR + ++ + +ND+G G+ ++ D V + + + +
Sbjct: 553 ADVEIMSMNRAAIKKREAELASQNNDDG--SKGDQSEDSNDHIEVVPVASAHDEDDDWNS 610
Query: 332 DSDEKNTKAHNILNDVESLLQNKTQTNIDKARLL 231
DSD + + +L Q+ KA L+
Sbjct: 611 DSDNDENNVEIVTAEAMTLAQDIASRRKSKADLI 644
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 464 KSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNV 360
KSSS +D D G ++ N VK VQA+ ++
Sbjct: 270 KSSSSVEFSDHSQDSGDPSQQNILQVKNVQAVLSI 304
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 356 TSSQLYTNDSDEKNTKAHNILNDVESLLQNKTQTNIDKARLLLQDLA 216
T + D DEK N V + +++T TN K + + DLA
Sbjct: 274 TEQDINPQDGDEKINAKSPTTNSVTDVAKDQTVTNPKKRKFEVTDLA 320
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 656 PAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKN 534
P LPPPAP L +S L+ +Q ++ IIP+N
Sbjct: 807 PPAPLPPPAPPLPTAMSSLQK--FEKNDSQIFRKTIIIPEN 845
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -2
Query: 668 LVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTKNLIADVLVDTI 489
L+D P E + P S++ S+ K G V ++ QK +S + + I + + + I
Sbjct: 339 LIDQPVEAIGWPLCQPSDLKSKNKIGNVSIEEGQKDVKSPVTVDKEKVRQAIVNSMENLI 398
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 683 PLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIP 540
P PP +P+ +L PP S +N ++L S P+Q P + P
Sbjct: 213 PESPPEKPIPSFVLSPPPVSATNEANKL-SDIQTSSPSQDIPAKHLEP 259
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 571 AGFNLTVPDFNSDNTLESDGAGGGNISA 654
+GFN +P FN LE++ G G IS+
Sbjct: 57 SGFNSFIPSFNPFVPLETNLPGNGPISS 84
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 329 SDEKNTKAHNILNDVESLLQNKTQTNIDKARLLL 228
+ E + NILND E+L+Q TQ D++RL L
Sbjct: 2 NSENASLFRNILNDTENLVQPLTQ---DESRLAL 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,826
Number of Sequences: 5004
Number of extensions: 61733
Number of successful extensions: 283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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