Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p07
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 35 0.084
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 32 0.59
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 30 1.8
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 30 2.4
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 30 2.4
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 29 3.1
U80438-1|AAB37631.1| 400|Caenorhabditis elegans Hypothetical pr... 29 5.5
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 29 5.5
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 29 5.5
U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical pr... 28 7.3
U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helica... 28 7.3
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 28 7.3
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 28 7.3
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 7.3
U80027-21|ABQ13061.1| 200|Caenorhabditis elegans Hypothetical p... 28 9.6
U80027-20|AAC48113.2| 400|Caenorhabditis elegans Hypothetical p... 28 9.6
U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical pr... 28 9.6
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 28 9.6
AF047655-10|AAC04396.1| 335|Caenorhabditis elegans Hypothetical... 28 9.6
AF043704-5|AAK21474.1| 128|Caenorhabditis elegans Hypothetical ... 28 9.6
AF039045-8|AAB94199.1| 300|Caenorhabditis elegans Hypothetical ... 28 9.6
AF039045-7|AAB94207.1| 333|Caenorhabditis elegans Hypothetical ... 28 9.6
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 9.6
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical protein
F54F12.1 protein.
Length = 1217
Score = 34.7 bits (76), Expect = 0.084
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = -2
Query: 683 PLQPPLVDLPAEMLPPPAPSLSNV-LSELKSGTVRLKPAQKRPQSEIIPKNSTTKNLIAD 507
P+ PP+V PA ++P PAP + + + E ++ L+ Q + ++++P+ S ++D
Sbjct: 781 PVLPPVVPAPAPVVPAPAPVVKELSVDETQADHPSLQSFQLQ-DTQMMPEESLA---LSD 836
Query: 506 VLVDTINRRRVAMAKSSSEATSNDEGWDDG 417
V+V I RVA AK T + + W +G
Sbjct: 837 VVVQGI---RVAAAKL---CTKSPQEWAEG 860
>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
protein F56D5.9 protein.
Length = 1132
Score = 33.9 bits (74), Expect = 0.15
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 356 TSSQLYTNDSDEKNTKAHNILNDVESLLQNKTQTNIDKARLLLQ-DLASRVVLSENPLDS 180
TS++ T +SD K+ N +NDV +L+ N T+ +ARL DL + PLD
Sbjct: 25 TSTEETTFESDIKSPNLENFMNDVSTLI-NLTKAISSQARLFHDFDLETSTFFKATPLDL 83
Query: 179 PAIGLQKQP 153
A L QP
Sbjct: 84 QAF-LALQP 91
>Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical
protein R06C1.3 protein.
Length = 468
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/74 (28%), Positives = 42/74 (56%)
Frame = -2
Query: 641 PPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTKNLIADVLVDTINRRRVAMAK 462
P + S++L++++SG ++LK Q R ++E + N +A +L +++ +
Sbjct: 398 PKQPDARSDLLAQIQSG-IKLKKVQ-RAEAEAAENAALEANNVAAILKRRMDQV-MGNDD 454
Query: 461 SSSEATSNDEGWDD 420
SSSE ++D+ WDD
Sbjct: 455 SSSEEGADDDEWDD 468
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/84 (21%), Positives = 41/84 (48%)
Frame = -2
Query: 701 IDLSSAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTK 522
+ L AP PP PPP PS++ ++++ ++ +V Q QS + + T
Sbjct: 148 MSLDDAPAAPPRKP-HQRSAPPPIPSMNTIMTKPRTNSVSYIKGQVVRQSAV--EQQTLA 204
Query: 521 NLIADVLVDTINRRRVAMAKSSSE 450
N + D++ +++ + ++ ++E
Sbjct: 205 NQVVDLVAMGMSKGQTQSSQITAE 228
>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
protein F56C9.10a protein.
Length = 1028
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/84 (21%), Positives = 41/84 (48%)
Frame = -2
Query: 701 IDLSSAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTK 522
+ L AP PP PPP PS++ ++++ ++ +V Q QS + + T
Sbjct: 145 MSLDDAPAAPPRKP-HQRSAPPPIPSMNTIMTKPRTNSVSYIKGQVVRQSAV--EQQTLA 201
Query: 521 NLIADVLVDTINRRRVAMAKSSSE 450
N + D++ +++ + ++ ++E
Sbjct: 202 NQVVDLVAMGMSKGQTQSSQITAE 225
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 SAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSG--TVRLKPAQKRPQSEIIPKNSTTKN 519
SAP P LP + P PA + +V SEL S T R++P ++ + ++S N
Sbjct: 439 SAPPVPSSSPLPPPLTPGPADDVVSVASELSSKFLTSRMRPKSQKDNTFAAMQSSIKAN 497
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 SAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSG--TVRLKPAQKRPQSEIIPKNSTTKN 519
SAP P LP + P PA + +V SEL S T R++P ++ + ++S N
Sbjct: 439 SAPPVPSSSPLPPPLTPGPADDVVSVASELSSKFLTSRMRPKSQKDNTFAAMQSSIKAN 497
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = -2
Query: 647 MLPPPAPSLSNVLS-----ELK-SGTVRLKPAQKRPQS--EIIPKNSTTKNLIADVLVDT 492
MLPP PS S L E+K + +V L Q + + + IP +++ N +VDT
Sbjct: 494 MLPPGYPSSSIYLPQPAYPEVKPNSSVILSSTQSQNNTSPQTIPASASVTNSATSTVVDT 553
Query: 491 INRRRVAMAKSSSEATSN 438
++ ++ S + ATSN
Sbjct: 554 SSQFQIPYVSSPASATSN 571
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 SAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSG--TVRLKPAQKRPQSEIIPKNSTTKN 519
SAP P LP + P PA + +V SEL S T R++P ++ + ++S N
Sbjct: 439 SAPPVPSSSPLPPPLTPGPADDVVSVASELSSKFLTSRMRPKSQKDNTFAAMQSSIKAN 497
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = -2
Query: 656 PAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTKNLIADVLVDTI---N 486
PA + PPP+ + + ++ +S LKP +++ + P + +NL+ L +++ N
Sbjct: 260 PASVQPPPSAASGSTVAGAQSSKEPLKPNEEQIRMVQDPVD-LVRNLVQKDLRNSLVEMN 318
Query: 485 RRRVAMAKSSSEATSNDEG 429
+R + + E N++G
Sbjct: 319 KRGAELVRQKQEGEVNEDG 337
>U80438-1|AAB37631.1| 400|Caenorhabditis elegans Hypothetical
protein T19B4.5 protein.
Length = 400
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Frame = -2
Query: 665 VDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNST------TKNLIADV 504
V P P P +++ +L++ V + PAQ+RPQ+ I P + K +D
Sbjct: 83 VGRPMAPRPQSYPHNMDMVQKLQNKNVYM-PAQQRPQTRISPAGARIVSFAGRKRDNSDG 141
Query: 503 LVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNV 360
L + + + A+ + T G ++ N VK V+ +V
Sbjct: 142 LPPGVKKMNMPAARPHQQQTQQQSHLQQGQQSQKNLQPVKVVRLASSV 189
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -2
Query: 689 SAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKP---AQKRPQSEIIPKNSTTKN 519
+ P PP++ P + PPP PS V S + + +R K + S + S+T +
Sbjct: 198 TVPKAPPILASPLQKTPPP-PSSLEVKSPILAALLRRKEDNCVKVSSPSSFLSPGSSTSS 256
Query: 518 LIADVLVDTINRRRVAMAK 462
+ +V T+ RR K
Sbjct: 257 TVPNV-KPTVTRRPTVPTK 274
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 416 GNNRPNAPDVKYVQALFNVFTSSQLYTNDSDEKNTKAHNILNDVESLLQNKTQTNIDK 243
G N PN+ D K V+ L F DE+ KA I +E LL+N T+ K
Sbjct: 412 GEN-PNSKDFKEVKGLVERFEQRLKGKELDDEQKNKAKLIEKALEMLLENFDDTDYKK 468
>U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical
protein R08C7.10b protein.
Length = 748
Score = 28.3 bits (60), Expect = 7.3
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = -2
Query: 692 SSAPLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTKNLI 513
S +P P D+P L P SL LSE + T++ P E++ ++ST+
Sbjct: 40 SDSPDVPDTPDVPVNQLSSPPLSLPETLSEGNAETLQNLSDDSEP--EMLSQSSTS---- 93
Query: 512 ADVLVDTINRRRVAMAKSSSEAT--SNDEGWD-DGGNNRPNAP 393
++NRR A S T S G+D D R AP
Sbjct: 94 ------SLNRRMEDSAIDPSRGTRKSQSRGFDYDPAGERTTAP 130
>U21308-11|AAB93312.3| 265|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform b
protein.
Length = 265
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 628 GAGGGNISAGKSTNGGCN 681
G GGGN +G ST GG N
Sbjct: 100 GNGGGNYGSGASTGGGAN 117
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 628 GAGGGNISAGKSTNGGCN 681
G GGGN +G ST GG N
Sbjct: 100 GNGGGNYGSGASTGGGAN 117
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 628 GAGGGNISAGKSTNGGCN 681
G GGGN +G ST GG N
Sbjct: 100 GNGGGNYGSGASTGGGAN 117
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 701 IDLSSAPLQPP-LVDLPAEMLPPPAPS 624
ID S P+ PP AE LPPPAP+
Sbjct: 185 IDESEIPVAPPNFSSAAAEPLPPPAPT 211
>U80027-21|ABQ13061.1| 200|Caenorhabditis elegans Hypothetical
protein T28A11.2b protein.
Length = 200
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 361 CLRRVNCTPTTVMKKIQKRIIF*TTSNLYYKTKH-----KRISTKLDCCYKIW 218
CLR + C P +K + ++I + Y T++ K++ +K CY W
Sbjct: 75 CLRTLQCGPENPERKRKLKLIRNYCDGIVYVTQNFTECDKKLESKNSTCYSAW 127
>U80027-20|AAC48113.2| 400|Caenorhabditis elegans Hypothetical
protein T28A11.2a protein.
Length = 400
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 361 CLRRVNCTPTTVMKKIQKRIIF*TTSNLYYKTKH-----KRISTKLDCCYKIW 218
CLR + C P +K + ++I + Y T++ K++ +K CY W
Sbjct: 75 CLRTLQCGPENPERKRKLKLIRNYCDGIVYVTQNFTECDKKLESKNSTCYSAW 127
>U70848-4|AAB09108.1| 869|Caenorhabditis elegans Hypothetical
protein C43G2.2 protein.
Length = 869
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -2
Query: 644 LPPPAPSLSNVLSELKSGT---VR-LKPAQKRPQSEIIPKNSTTKNLIADVLVDTINRRR 477
LPPP P S++ SEL+ + VR L+ A++ Q E+ + + L DT+N R
Sbjct: 276 LPPPQPGASDLFSELQGSSDVKVRELEAAKEGLQEELKSREKIFIEFVTG-LADTLNIHR 334
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = -2
Query: 557 QSEIIPKNSTT--KNLIADVLVDTINRR-RVAMAKSSSEATSNDEGWDDGGN-NRPNAPD 390
QS I ++TT + L + ++ TI+ R A S++ T+++ G + N P+ P
Sbjct: 335 QSSSISHDTTTSGRELPSSLMGSTISMEMRSGGASSATTTTTSNSGQQTSRSLNAPHPPA 394
Query: 389 VKYVQALFNVFTSSQLYTNDSDEKNTK 309
+Q +F SS+ + K ++
Sbjct: 395 THRIQRFIALFNSSKTSDGSGEHKKSR 421
>AF047655-10|AAC04396.1| 335|Caenorhabditis elegans Hypothetical
protein C17B7.2 protein.
Length = 335
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 361 CLRRVNCTPTTVMKKIQKRIIF*TTSNLYYKTKH-----KRISTKLDCCYKIW 218
CLR + C P +K + ++I + Y T++ K++ +K CY W
Sbjct: 53 CLRTLQCGPENPERKRKLKLIRNYCDGIVYVTQNFTECDKKLESKNSTCYSAW 105
>AF043704-5|AAK21474.1| 128|Caenorhabditis elegans Hypothetical
protein W01B11.1 protein.
Length = 128
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 683 PLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQSEIIPKNSTTKN 519
P+Q P P P PAPS + + ++ +++PA+K +S+ K+S+ N
Sbjct: 19 PVQQPPAVAPGASRPAPAPS-NELPPASEAKKFQVQPAKKASKSKSKSKDSSPSN 72
>AF039045-8|AAB94199.1| 300|Caenorhabditis elegans Hypothetical
protein F15E11.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 151 KGCFCKPMAGLSNGFSLNTTRLAKSCS 231
KG +C+P + + NG N+T L C+
Sbjct: 218 KGKYCEPASAVENGKVCNSTSLTDGCT 244
>AF039045-7|AAB94207.1| 333|Caenorhabditis elegans Hypothetical
protein F15E11.11 protein.
Length = 333
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 151 KGCFCKPMAGLSNGFSLNTTRLAKSCS 231
KG +C+P + + NG N+T L C+
Sbjct: 251 KGKYCEPASAVENGKVCNSTSLTDGCT 277
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 587 VRLKPAQKRPQ-SEIIPKNSTTKNLIADVLVDTINRRRVAMAKSSSE 450
V L AQK+ + S + P + T + A ++VDT RVA + E
Sbjct: 3491 VELDEAQKKEEVSSVAPSDQPTSSKTAQLVVDTSAAGRVATGRFDGE 3537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,807
Number of Sequences: 27780
Number of extensions: 352319
Number of successful extensions: 1454
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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