Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p07
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.7  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   8.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 584 RLKPAQKRPQSEIIPKNSTTKNLIADVLVDTINRRRV 474
           R+  + + P   +   N  TKN ++   +DT NR+++
Sbjct: 24  RIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPNRQKI 60


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 521 NLIADVLVDTINRRRVAMAKSSSEATSNDEGW 426
           +L++ VL+DT    ++   K    A +N  GW
Sbjct: 11  SLVSVVLLDTTQEEKLEWTKYPFGAEANTPGW 42


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 544 IISDCGRFCAGFNLTVPDFNSDNTLESDGAGGGNISAGKSTNGG 675
           ++  C  +C   NL  P  +S   + + GA GG+I  G +  GG
Sbjct: 7   VVMSCCCWCCD-NLGGPGSSSAGGVVT-GASGGSIVVGANNGGG 48


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 577 FNLTVPDFNSDNTLESDG 630
           FNL   D NS N LES G
Sbjct: 118 FNLLRADANSVNELESQG 135


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 466 QNRLRKQLLTTRVGTTAAIIG 404
           Q+ + KQLL +R  T AAI G
Sbjct: 4   QDYVDKQLLASRCVTKAAIAG 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,902
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)