Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p05
(458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 118 3e-27
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 118 3e-27
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 107 4e-24
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 107 4e-24
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 107 4e-24
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 107 4e-24
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 107 4e-24
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 74 4e-14
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 65 3e-11
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 48 4e-06
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 42 2e-04
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 41 4e-04
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 38 0.004
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 38 0.005
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 32 0.17
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 32 0.17
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 32 0.23
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 30 0.70
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 29 1.2
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 27 5.0
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 27 5.0
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 27 5.0
AL132876-21|CAD21671.1| 418|Caenorhabditis elegans Hypothetical... 27 5.0
Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical pr... 27 8.7
U23528-8|AAK31386.2| 293|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 8.7
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 118 bits (283), Expect = 3e-27
Identities = 59/130 (45%), Positives = 80/130 (61%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXX 273
++ + ++K KI+ EGIP +QRL +AG+QLED SD I E+T+++
Sbjct: 18 NEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELLGGAKK 73
Query: 272 XXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 93
K Y+TP KLAVL++YK+DENGKI RLR+EC CG GVFMA +RH
Sbjct: 74 RKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRH 133
Query: 92 YCGKCHSTMV 63
YCG+CH T+V
Sbjct: 134 YCGRCHDTLV 143
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 118 bits (283), Expect = 3e-27
Identities = 59/130 (45%), Positives = 80/130 (61%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXX 273
++ + ++K KI+ EGIP +QRL +AG+QLED SD I E+T+++
Sbjct: 18 NEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELLGGAKK 73
Query: 272 XXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 93
K Y+TP KLAVL++YK+DENGKI RLR+EC CG GVFMA +RH
Sbjct: 74 RKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRH 133
Query: 92 YCGKCHSTMV 63
YCG+CH T+V
Sbjct: 134 YCGRCHDTLV 143
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 18 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 18 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 94 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 170 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 246 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 322 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 398 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 60.9 bits (141), Expect = 4e-10
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAG 369
E SDTIENVKAKIQDKEGIPP+QQRLIFAG
Sbjct: 474 EASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 18 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 94 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 170 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 246 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 322 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 398 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 474 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 550 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 626 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 702 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 754
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 778 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 830
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 18 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 94 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 170 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 246 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 322 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 398 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 474 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 550 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 626 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 702 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 754
Score = 106 bits (254), Expect = 9e-24
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQK+STLHLV
Sbjct: 778 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKQSTLHLV 830
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 107 bits (257), Expect = 4e-24
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
E SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 18 EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 74.1 bits (174), Expect = 4e-14
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
EP+D +E +K K+++KEGIPP QQRLIFAGKQ+ D +T +DY + S LHLV
Sbjct: 18 EPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLV 70
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 300
+DT+E +K K+Q+K G+PP+QQRLIF QLE+ R L YNI+ E +HLV
Sbjct: 180 TDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAYNIRDEDIIHLV 230
Score = 34.7 bits (76), Expect = 0.033
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 303
E SD I+++ K+ + + P ++ +D RT+SDYNI+ STL L
Sbjct: 106 EASDAIKDLNFKVAEAQRKPHQPSNIVLC----KDQRTISDYNIKNGSTLRL 153
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 47.6 bits (108), Expect = 4e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = -1
Query: 449 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 309
DT+ ++K I+ + IP + L F+GK+LED ++ DYNIQK ST+
Sbjct: 173 DTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTI 219
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = -1
Query: 458 EPSDTIENVKAKIQDKEGIP 399
E SDTIENVKAKIQDKEGIP
Sbjct: 18 EASDTIENVKAKIQDKEGIP 37
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 303
SDTI VK I + + R++ K LED TL+ YNIQ+ STL L
Sbjct: 192 SDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTLGL 241
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 303
SDTI ++K +I + + R++ GK LED +L+ YNIQ+ + + L
Sbjct: 215 SDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWL 264
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 309
SDTI +K +I GI R K LED TL+ YNI++ ST+
Sbjct: 181 SDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 37.5 bits (83), Expect = 0.005
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE---DGRTLSDYNIQKESTLHL 303
SDT+ +VKAKI +K I PN Q+L+ L+ D TL D + + STL L
Sbjct: 121 SDTMASVKAKIWEKLRILPNTQKLLLENWDLDLFSDHSTLFDNSFENGSTLRL 173
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = -1
Query: 443 IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 303
+ +K +IQD+ G+P +Q+L+ G ++D + + YN+ + ++L
Sbjct: 599 MSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYL 645
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = -1
Query: 443 IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 303
+ +K +IQD+ G+P +Q+L+ G ++D + + YN+ + ++L
Sbjct: 599 MSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIYL 645
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 31.9 bits (69), Expect = 0.23
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 449 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 333
+++E +K KI+ + GIP + L GK L D + L+DY
Sbjct: 163 ESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY 201
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 30.3 bits (65), Expect = 0.70
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1
Query: 449 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDYNIQKESTL 309
+T+ +K +I+ + + N+Q L+F G +L+D +T++D I ++ +
Sbjct: 42 ETVSILKNRIEQETEVLTNRQVLLFKGMELKDNNKTMTDCGINSDAKI 89
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 452 SDTIENVKAKIQDKEGIPPNQQRLIFAGK 366
++ + ++K KI+ EGIP +QRL +A +
Sbjct: 18 NEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1250 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1279
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1343 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1372
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1343 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1372
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1343 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1372
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1250 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1279
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1343 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1372
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1343 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1372
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1343 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1372
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 383 LIFAGKQLEDGRTLSDYNIQKESTLHL 303
L + G++L+D R++ YNI + ++L
Sbjct: 129 LYYGGQKLQDNRSIGSYNIDQSREIYL 155
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 STEVDLRWKAAGGWTYPLGLQYPEGI-HPP 307
++ V LRW GG P G+Q +GI H P
Sbjct: 1342 NSNVQLRWSRPGGAPLPSGVQEQQGILHIP 1371
>AL132876-21|CAD21671.1| 418|Caenorhabditis elegans Hypothetical
protein Y105E8A.25 protein.
Length = 418
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 284 HHEASTPGGGWIPSGYCSPRGYVHPPAAF 370
H+ +S+P IP+ SP + +PP +F
Sbjct: 113 HNSSSSPDHHRIPTDISSPDSFTYPPVSF 141
>Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical
protein K08C9.7 protein.
Length = 154
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 200 RFYKVDENGKIHRL 159
+++K+DENGKI RL
Sbjct: 111 KYFKIDENGKISRL 124
>Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical
protein F34H10.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 200 RFYKVDENGKIHRL 159
+++K+DENGKI RL
Sbjct: 99 KYFKIDENGKISRL 112
>U23528-8|AAK31386.2| 293|Caenorhabditis elegans Hypothetical
protein B0034.5 protein.
Length = 293
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 157 RRRWILPFSSTL*NLRTASLTFFFLCLIFL 246
RRR+ L S N+R A+ T F+C+I+L
Sbjct: 178 RRRFSLRMQSRT-NVRQATATMLFICVIYL 206
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 302 PGGGWIPSGYCSPRGYVHPP 361
P G+ P GY P GY +PP
Sbjct: 294 PPHGYYPPGYPYPPGYPYPP 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,982
Number of Sequences: 27780
Number of extensions: 186880
Number of successful extensions: 586
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -