Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p04
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.44 
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    28   1.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.4  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   9.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 120  SAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGS 227
            S P  LPVS ++  P ++P  D+P +A + + +  S
Sbjct: 968  SIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTS 1003


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 107 EAAASDGDDSSEE*RGTAEPNLASLKKTIRID 12
           E  + D D+SSEE + T EP+    +KT+  D
Sbjct: 241 EEFSEDSDNSSEENKDTNEPSTKDAEKTVPED 272


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -3

Query: 506 PWVNVTKTYAICLIVCGVSVAAYPLFITNY----WMLSVISAVFGVTFASTYSYTPAIL 342
           P +++   + I L +  + ++A   F TN     W+L +  +V GVTF +  + +P IL
Sbjct: 110 PVLSIIVGWLIFLFIT-IGISASDFFSTNLVTISWLLQLPDSVVGVTFLALGNGSPDIL 167


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 117 RSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQ 215
           R +  H+P++   +EP A   +DY     +ER+
Sbjct: 511 RISRQHMPLTHTTYEPSAPYYNDYELAEEIERR 543


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 489 QNLRNLPHRLRCVCCRVPPLHHQLL 415
           + ++N     RC+CC VP  + +LL
Sbjct: 137 EKIKNELESFRCLCCHVPCKNKKLL 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,881
Number of Sequences: 5004
Number of extensions: 62634
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)