Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p04
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 32 0.60
09_06_0018 + 20256603-20256881,20257003-20257200 31 1.1
01_01_0357 - 2816650-2817897 30 2.4
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 29 3.2
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 29 4.3
10_08_0127 - 15010125-15011068,15011328-15011835 29 5.6
03_04_0249 - 19341182-19342237,19342284-19342505 29 5.6
07_03_1151 + 24385272-24386543 28 7.4
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 28 9.8
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 31.9 bits (69), Expect = 0.60
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 65 VTLRSCRLRPKRQPPSAEERSRTSAGFWCSPRAPRTAPR 181
+T CRL + + ++ R G +CSP PR +PR
Sbjct: 288 LTTEKCRLVDEHDLCNFSQKKRRKRGSFCSPETPRRSPR 326
>09_06_0018 + 20256603-20256881,20257003-20257200
Length = 158
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = -2
Query: 438 PPLHHQLLDAIRHLRSLWGHLRQHVFVHSSHSNGATAGRELYCGVRPHPAQRRDRSPYRT 259
PP H++L + H+ L G R+ S G G + G R A+ R+
Sbjct: 73 PPAHNRLRLRLEHILLL-GETRKANLDRMFTSTGR--GWDELGGGRRGGAELREEFLGEA 129
Query: 258 TDRRAPLRLDWNLGSDVLHGRSVDS 184
+DRRA ++ D + G D H V+S
Sbjct: 130 SDRRANIKADGDYGGDCGHDSGVES 154
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -2
Query: 399 LRSLWGHLRQH----VFVHSSHSNGATAGRELYCGVRPHPAQRRDRSP 268
LR LWG R F H ++ +T G +RPHP Q R R+P
Sbjct: 44 LRDLWGGQRAGDLLGFFFHRQRNSASTFGFLPAPPLRPHPLQLRRRAP 91
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 29.5 bits (63), Expect = 3.2
Identities = 27/98 (27%), Positives = 39/98 (39%)
Frame = -2
Query: 534 GSPRLDW*STVGQRHQNLRNLPHRLRCVCCRVPPLHHQLLDAIRHLRSLWGHLRQHVFVH 355
GS R W S RH + R VCCR P + R+ + +R F +
Sbjct: 468 GSGRDGWFSIEVARHTVKDEIVGLRRHVCCRSPLVGSAGWPRTSRARTTYYDVRADKFTY 527
Query: 354 SSHSNGATAGRELYCGVRPHPAQRRDRSPYRTTDRRAP 241
+ S+ + R+L+ P PA RR +RR P
Sbjct: 528 ARASDTSPTARQLH--ALP-PANRRTGPRTDDEERRRP 562
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 92 PKRQPPSAEERSRTSAGFWCSPRAPRTAP 178
P P +A S SA WCSP TAP
Sbjct: 322 PPDSPSTAAPPSLPSAACWCSPAVQTTAP 350
>10_08_0127 - 15010125-15011068,15011328-15011835
Length = 483
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 520 GLVINRGSTSPKPTQFASSSAVCLLPRTPSSSP 422
G + + +P P ASSS PRTPSS P
Sbjct: 157 GRFCKKSAAAPPPPFEASSSRFLATPRTPSSPP 189
>03_04_0249 - 19341182-19342237,19342284-19342505
Length = 425
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 132 HLPVSGVVHEPHAQPRDDYPQT-AHVERQIPGSSQVVEEPSDRWSYKVTDPFVEQDE 299
H P V EP +DY Q+ VE + G+S+ EE D S D E DE
Sbjct: 10 HAPTPDPVSEPEESSGEDYAQSDEEVEENVEGASE--EESGDDVSGSGEDEDEEGDE 64
>07_03_1151 + 24385272-24386543
Length = 423
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 396 RSLWGHLRQHV-FVHSSHSNGATAGRELYCGVRPHPAQRRDRSPY 265
RSL GH+R H+ F ++ GA G Y G+R +P + R S +
Sbjct: 26 RSLGGHMRSHISFGEAAAELGANGGVVGY-GLRENPKKTRRLSEF 69
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/40 (20%), Positives = 24/40 (60%)
Frame = -3
Query: 476 ICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSY 357
+C+ + G+++ +PL + +L+++S++F + + Y
Sbjct: 245 VCVPIAGLAILFWPLVVVGSVLLAIVSSIFVGLYGAVVVY 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,229,031
Number of Sequences: 37544
Number of extensions: 466199
Number of successful extensions: 1551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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