Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p04
         (796 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    26   1.5  
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     25   3.6  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   3.6  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    25   3.6  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    24   4.7  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   4.7  
AY146744-1|AAO12104.1|  176|Anopheles gambiae odorant-binding pr...    23   8.2  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 111 QQRSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGSSQVVEEPSD 254
           QQ+    HLP    +H  H Q    YP+     R    S ++ EE  D
Sbjct: 611 QQQQQARHLPQQQAIHHIHQQ---QYPRQVIHRRPSTSSVELSEESMD 655


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 78  AVVSVRSGSLLQQRSAPAHLPVSGVVHEPHAQPRDDYP 191
           +  S   GS+  Q S P H+P      +   + R  YP
Sbjct: 112 SAASESPGSVSSQPSGPIHIPAKRPAFDTDTRLRHSYP 149


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 487 KPTQFASSSAVCLLP 443
           KPT F SS++ C LP
Sbjct: 439 KPTNFTSSASSCFLP 453


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -2

Query: 540 CLGSPRLDW*STVGQRHQNLRNLPHRLRCVCCRVPPLHHQLLDAIR 403
           C G  R       GQ    +R  P+ + C+ CR   +   +  ++R
Sbjct: 343 CTGQDRSKLCIKCGQEGHKIRECPNAMTCLDCREDMVEPHITGSLR 388


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 162 PHAQPRDDYPQTAHVERQIPGSSQVVEEPSDRWSYKVTDPFVEQDEA 302
           P   P D  P   H+E +    ++  EE +D    + ++   E +EA
Sbjct: 66  PEPVPEDGSPDEEHLEEEQEEEAEADEEEADESESEESEESDELEEA 112


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 74   RSCRLRPKRQPPSAEERSRTSAGFWCSPRAPRTAPR*LSTDRPCRTSDPRFQSSRRGAL 250
            R+ R    R+   A +R    AG    P +P  +PR  +     R    RF++ RR A+
Sbjct: 1044 RNDRRNASRRAARARQRELQRAG---RPPSPPPSPRTAARRADLRLRQARFRARRRQAI 1099


>AY146744-1|AAO12104.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP8 protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 189 PQTAHVERQIPGSSQVVEEPSD 254
           P  A+V  Q+  S+ +VE+P D
Sbjct: 116 PHEANVHAQMQHSNAIVEDPDD 137


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,539
Number of Sequences: 2352
Number of extensions: 15880
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)