Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p04
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    66   4e-11
U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    65   6e-11
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    65   6e-11
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    65   6e-11
Z78545-2|CAB01766.1|  596|Caenorhabditis elegans Hypothetical pr...    52   4e-07
AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    52   4e-07
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    50   2e-06
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr...    31   0.95 
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.     31   0.95 
U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    29   3.8  

>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 39/126 (30%), Positives = 64/126 (50%)
 Frame = -3

Query: 515 GDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYTPAILME 336
           GD    N    Y I L +CG+ V A+      Y +L + + +FG T AS    T  IL++
Sbjct: 419 GDDTARNRLWMYNISLTICGI-VTAFCYKFDGYILLDIYAVLFGFTIASYVCLTSVILVD 477

Query: 335 LLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISGLCVGLV 156
           LL ++  T  +GL+LL +             L DLTG + L+F   G+ +++SGL + ++
Sbjct: 478 LLGLDKLTNAFGLLLLWQGVGTVIGPLVSGYLADLTGNYTLSFVFCGINLMVSGLMLFVI 537

Query: 155 DYTRNR 138
            Y + +
Sbjct: 538 PYFKRK 543


>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 36/132 (27%), Positives = 64/132 (48%)
 Frame = -3

Query: 533 VALGWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYT 354
           V  GW  DQ  ++      + LIV G+   A PL +T+       + VFG   ++    T
Sbjct: 564 VFFGWLTDQKILSALTINNLSLIVSGLLTLACPL-LTSIAGQYFYAIVFGFIISAYICLT 622

Query: 353 PAILMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISG 174
             +L +L+ +EN T  +GL+++               +YD+TG++D  FY GGL ++++G
Sbjct: 623 SIVLADLMGLENLTNSFGLLVVARGIASLVGPPFAGIVYDITGSYDTAFYFGGLVLLVAG 682

Query: 173 LCVGLVDYTRNR 138
           L    + +   +
Sbjct: 683 LISATIPFVTKK 694


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 36/132 (27%), Positives = 64/132 (48%)
 Frame = -3

Query: 533 VALGWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYT 354
           V  GW  DQ  ++      + LIV G+   A PL +T+       + VFG   ++    T
Sbjct: 509 VFFGWLTDQKILSALTINNLSLIVSGLLTLACPL-LTSIAGQYFYAIVFGFIISAYICLT 567

Query: 353 PAILMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISG 174
             +L +L+ +EN T  +GL+++               +YD+TG++D  FY GGL ++++G
Sbjct: 568 SIVLADLMGLENLTNSFGLLVVARGIASLVGPPFAGIVYDITGSYDTAFYFGGLVLLVAG 627

Query: 173 LCVGLVDYTRNR 138
           L    + +   +
Sbjct: 628 LISATIPFVTKK 639


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 36/132 (27%), Positives = 64/132 (48%)
 Frame = -3

Query: 533 VALGWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYT 354
           V  GW  DQ  ++      + LIV G+   A PL +T+       + VFG   ++    T
Sbjct: 564 VFFGWLTDQKILSALTINNLSLIVSGLLTLACPL-LTSIAGQYFYAIVFGFIISAYICLT 622

Query: 353 PAILMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISG 174
             +L +L+ +EN T  +GL+++               +YD+TG++D  FY GGL ++++G
Sbjct: 623 SIVLADLMGLENLTNSFGLLVVARGIASLVGPPFAGIVYDITGSYDTAFYFGGLVLLVAG 682

Query: 173 LCVGLVDYTRNR 138
           L    + +   +
Sbjct: 683 LISATIPFVTKK 694


>Z78545-2|CAB01766.1|  596|Caenorhabditis elegans Hypothetical
           protein M03B6.2 protein.
          Length = 596

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
 Frame = -3

Query: 533 VALGWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYT 354
           +  G   D+P V+        LI  G++    PL+ T YW        F +  A   +  
Sbjct: 439 IGCGILADRPEVSALAVNNFALIAAGLATMTVPLY-TAYWQFLAFCVPFSIGVACFAALR 497

Query: 353 PAILMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISG 174
             I++EL+ +E  +  +G++L                + D TG +D +FY+ G  + ISG
Sbjct: 498 SIIVVELIGLEKLSNAFGILLTFMGVGAVVGSPLAAAMKDYTGNFDTSFYVMGALMTISG 557

Query: 173 -LCVGL 159
            +C+ L
Sbjct: 558 AMCIPL 563


>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 35/118 (29%), Positives = 57/118 (48%)
 Frame = -3

Query: 524 GWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYTPAI 345
           G  G+    N    Y I L +CG+ +  +      +  L+  SA+FG + AS    T  I
Sbjct: 457 GGIGNDTARNRLWMYNISLTICGL-LTVFCYQFNGFIPLATYSALFGFSIASYICLTSVI 515

Query: 344 LMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISGL 171
           L++LL ++  T  +GL+LL +             L D+TG + L+F   G+ ++ SGL
Sbjct: 516 LVDLLGLDKLTNAFGLLLLWQGVGTVFGPPVSGYLADMTGNYTLSFVFCGVNLLASGL 573


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/121 (23%), Positives = 52/121 (42%)
 Frame = -3

Query: 533 VALGWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYT 354
           +  G   D P ++  +   +  I+ G S+   P F T  W   V    F    A   +  
Sbjct: 421 IGCGMVADHPKMSALQVSNVATIIAGTSMLFVP-FCTELWHYVVFCIPFSAGVACFAALR 479

Query: 353 PAILMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISG 174
             I +EL+ VE  +  +G++++               + D+TG +D++FY+ G+    SG
Sbjct: 480 SVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITGNYDISFYVMGIIFAFSG 539

Query: 173 L 171
           +
Sbjct: 540 V 540


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/121 (23%), Positives = 52/121 (42%)
 Frame = -3

Query: 533 VALGWTGDQPWVNVTKTYAICLIVCGVSVAAYPLFITNYWMLSVISAVFGVTFASTYSYT 354
           +  G   D P ++  +   +  I+ G S+   P F T  W   V    F    A   +  
Sbjct: 394 IGCGMVADHPKMSALQVSNVATIIAGTSMLFVP-FCTELWHYVVFCIPFSAGVACFAALR 452

Query: 353 PAILMELLPVENFTVGYGLILLNEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISG 174
             I +EL+ VE  +  +G++++               + D+TG +D++FY+ G+    SG
Sbjct: 453 SVICVELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITGNYDISFYVMGIIFAFSG 512

Query: 173 L 171
           +
Sbjct: 513 V 513


>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical
           protein C10C5.6b protein.
          Length = 1782

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 QQRSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGSSQ 233
           QQ++    +  SG  H P+AQPR   PQ     +Q P   Q
Sbjct: 650 QQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQ 690


>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical
           protein C10C5.6a protein.
          Length = 1776

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 QQRSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGSSQ 233
           QQ++    +  SG  H P+AQPR   PQ     +Q P   Q
Sbjct: 650 QQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQ 690


>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical
           protein C10C5.6b protein.
          Length = 1782

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 QQRSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGSSQ 233
           QQ++    +  SG  H P+AQPR   PQ     +Q P   Q
Sbjct: 650 QQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQ 690


>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical
           protein C10C5.6a protein.
          Length = 1776

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 QQRSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGSSQ 233
           QQ++    +  SG  H P+AQPR   PQ     +Q P   Q
Sbjct: 650 QQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQ 690


>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
          Length = 1800

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 QQRSAPAHLPVSGVVHEPHAQPRDDYPQTAHVERQIPGSSQ 233
           QQ++    +  SG  H P+AQPR   PQ     +Q P   Q
Sbjct: 674 QQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQ 714


>U64609-8|AAB04605.2|  465|Caenorhabditis elegans Hypothetical
           protein T28H11.8 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
 Frame = -3

Query: 452 SVAAYPLFITNYWMLSVISAVFGVTFASTYSYTPAILMELLPV-----ENFTVGYGLILL 288
           S++A+ LF+T +    V S +F + FAS + + P I    + +      +F +   +++ 
Sbjct: 321 SMSAFSLFLTGFLDDRVWSLIFMMIFASLHFFVPVICSRTIQIRAGQHSHFALNLNMVIA 380

Query: 287 NEXXXXXXXXXXXXXLYDLTGTWDLTFYMGGLWIVISGL 171
                            +    W   FY   + +VI+ +
Sbjct: 381 GIAQILIPLGVQAAVPENTRSQWSFVFYFLVITVVITSI 419


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -2

Query: 378 LRQHVFVHSSHSNGATAGRELY--CGVRPHPAQRRDRSPYRTTDRRAPLRLDWNLGSDVL 205
           L  HVF+H++ ++G+    E Y   G     A RR+    R  D R  +   WN     +
Sbjct: 4   LMHHVFLHTTFNSGSVKNGECYLPSGKLLKRAVRRELRSLRPDD-RIMIENAWN----AM 58

Query: 204 HGRSVDSHLGAVRGARGLHQKPA 136
               + + +G V    G+H  PA
Sbjct: 59  KKSGLYNKIGRVHKYSGVHSGPA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,320,236
Number of Sequences: 27780
Number of extensions: 367381
Number of successful extensions: 1106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)