Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p04
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          26   0.46 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   5.7  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   10.0 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   10.0 

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 147 GVVHEPHAQPRDDYPQTAHVERQIPGSSQVVEEPSDRWSYKVTDPFVEQDEAVPHSKVLD 326
           G+V+     P        ++E Q+   +  VEE     + + +  F   D A PH+ ++ 
Sbjct: 76  GIVYFELLSPNRTINSVVYIE-QLTKLNNAVEEKRPELTNRKSVVF-HHDNARPHTSLVT 133

Query: 327 RQ*LH*NGWSV 359
           RQ L   GW V
Sbjct: 134 RQKLLELGWDV 144


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +3

Query: 156 HEPHAQPRDDYPQTAHVERQIPGSSQVVEEPSDRWSYKVTDPFVEQDEAVP 308
           HE H   +      A  ++  PG     ++ + +    VT P  +Q +A P
Sbjct: 198 HEQHMMYQQQQQSQAASQQSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAP 248


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 147 GVVHEPHAQPRDDYPQTAHVERQIPGSSQVVEEPSDRWSYKVTDPFVEQDEAVPHSKVLD 326
           G+V+     P        ++E Q+   +  VEE     + +    F   D A PH+ ++ 
Sbjct: 198 GIVYFELLPPNRTINSVVYIE-QLTKLNNAVEEKRPELTNRKGVVF-HHDNARPHTSLVT 255

Query: 327 RQ*LH*NGWSV 359
           RQ L   GW V
Sbjct: 256 RQKLLELGWDV 266


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 294 DEAVPHSKVLDRQ*LH*NGWSV 359
           D+A PH+ ++ RQ L   GW V
Sbjct: 124 DDARPHTYLVTRQKLLELGWDV 145


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 312 CGVRPHPAQRRDRSPYRT 259
           C +R H   R+ R+P+ T
Sbjct: 1   CTLRKHKPNRKPRTPFTT 18


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 104  AAASDG--DDSSEE*RGTAEPNLASLKKTIRIDFR 6
            AA+S G  + +S    GT+ P  + + KT+ ++FR
Sbjct: 914  AASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFR 948


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/27 (22%), Positives = 18/27 (66%)
 Frame = -3

Query: 215 LTFYMGGLWIVISGLCVGLVDYTRNRQ 135
           LTF +G + + ++ +C G+++  ++ +
Sbjct: 83  LTFLLGAILVQVAIICEGVMNIQKDNK 109


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 239 YDLTGTWDLTFYMGGLWI 186
           Y+++G W     M  LW+
Sbjct: 101 YEISGNWSFGTIMCDLWV 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,538
Number of Sequences: 438
Number of extensions: 4288
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)