Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p02
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...   145   8e-36
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   3.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   7.7  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   7.7  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score =  145 bits (351), Expect = 8e-36
 Identities = 79/260 (30%), Positives = 132/260 (50%), Gaps = 1/260 (0%)
 Frame = -3

Query: 841  FAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLLPVITLKLSDLVS-QLQQSYQLT 665
            F E++  +RV    +  L  L +Y+ RN + A     LP IT  L+ + S +L ++Y+L 
Sbjct: 948  FLEIYTASRVYLPTISGLDPLVSYVRRNAETAERSQALPFITRNLASIKSHELHEAYRLV 1007

Query: 664  TAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNT 485
             A +  EA    + +       + +S+ E  E   L+  C  Y+V L+ E  R+ + +  
Sbjct: 1008 KANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVALSCELERRRLGE-- 1065

Query: 484  VDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEV 305
             ++ KR  E++ YF    LQP+H I+ LR A+N   KLKNY++A+    +LL+L      
Sbjct: 1066 -EDTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQLAESGPA 1124

Query: 304  AQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEHK 125
            A+ A + +   ++ P D  ++ YD H    IC  +  P+Y G   + CS+C A +   + 
Sbjct: 1125 AEAANRAITLGDRNPHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCSVCGAVYHKGYV 1184

Query: 124  GKLCPVCGVAEIGKDALGLR 65
             ++C VC V  IG+   G R
Sbjct: 1185 NEVCTVCDVGGIGQKGTGRR 1204


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 295 ARKILQACEKTPTDEHQLLYDEHNPFSIC 209
           +R +L  C++   D +Q+L  E +P SIC
Sbjct: 369 SRGVLSFCDQAIRDLYQILEVEFHPLSIC 397


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -3

Query: 823 HARVTFGALPSLPALTAYLHR-----NWKEATGKDLLPVITLKLSDL 698
           H   TFG L  L ++    HR      ++++  KDLLP+IT  L+ +
Sbjct: 212 HISTTFG-LELLESILVNHHRLFQIPEFQDSVRKDLLPIITASLASM 257


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = -3

Query: 412 ILTLRTALNMFFKLKNYRTAASF----ARRLLELGPRPEVAQQARKILQACEKTPTDEHQ 245
           ILT+RT++ + FK+ N +         AR L E G   E A+   ++LQ   K P +E  
Sbjct: 155 ILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCYYRVLQ--YKVPGNE-- 210

Query: 244 LLYDEH 227
           L+Y E+
Sbjct: 211 LIYREN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,325
Number of Sequences: 5004
Number of extensions: 45209
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)