Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p02
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 203 2e-52
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 201 6e-52
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 200 8e-52
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 40 0.002
05_05_0014 - 21523259-21523612,21523877-21524187,21524256-21524469 32 0.66
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 31 1.5
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 31 1.5
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 31 1.5
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 3.5
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547... 29 4.7
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 28 8.1
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560... 28 8.1
01_01_1125 - 8920590-8924372 28 8.1
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 203 bits (495), Expect = 2e-52
Identities = 98/267 (36%), Positives = 156/267 (58%), Gaps = 2/267 (0%)
Frame = -3
Query: 844 VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLL--PVITLKLSDLVSQLQQSYQ 671
+F ++ + AL + P + + + W E+ ++ P + S + +L+ +Y+
Sbjct: 955 LFLDLHMGSHSYLRALATAPIIPVAVEKGWSESASPNVRGPPALVFTFSQMEDRLKAAYK 1014
Query: 670 LTTAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPK 491
TT G+FPEA+ + + +PL++VDS+ E+ E ++L+ + R+Y++GL ME RK +
Sbjct: 1015 ATTEGKFPEALRQFLNILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELR- 1073
Query: 490 NTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRP 311
D+ R E+AAYFT+CKLQ VH L L +A+ + +K KN+ TA FAR LLE P
Sbjct: 1074 ---DDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNE 1130
Query: 310 EVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPE 131
A++AR++ Q C D +L YD NPF +CG +Y PIYRG+ + C C + F+P
Sbjct: 1131 SQAKRARQVQQQCSGKK-DSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPS 1189
Query: 130 HKGKLCPVCGVAEIGKDALGLRICPLQ 50
+G+LC +C +A +G DA GL P Q
Sbjct: 1190 IEGQLCTICELAVVGADASGLLCSPTQ 1216
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 201 bits (490), Expect = 6e-52
Identities = 97/267 (36%), Positives = 155/267 (58%), Gaps = 2/267 (0%)
Frame = -3
Query: 844 VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLL--PVITLKLSDLVSQLQQSYQ 671
+F ++ + AL + P + + + W E+ ++ P + + +L+ +Y+
Sbjct: 955 LFVDLHMGSHSYLRALATAPIIPIAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYK 1014
Query: 670 LTTAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPK 491
TT G+FPEA+ + + +PL++VDS+ E+ E ++L+ + R+Y++GL ME RK +
Sbjct: 1015 ATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELR- 1073
Query: 490 NTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRP 311
D+ R E+AAYFT+CKLQ VH L L +A+ + +K KN+ TA FAR LLE P
Sbjct: 1074 ---DDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNE 1130
Query: 310 EVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPE 131
A++AR++ Q C D +L YD NPF +CG +Y PIYRG+ + C C + F+P
Sbjct: 1131 AQARRARQVQQQCSGKK-DSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPS 1189
Query: 130 HKGKLCPVCGVAEIGKDALGLRICPLQ 50
+G+LC +C +A +G DA GL P Q
Sbjct: 1190 IEGQLCTICELAVVGADASGLLCSPTQ 1216
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 200 bits (489), Expect = 8e-52
Identities = 97/267 (36%), Positives = 155/267 (58%), Gaps = 2/267 (0%)
Frame = -3
Query: 844 VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLL--PVITLKLSDLVSQLQQSYQ 671
+F ++ + AL + P + + + W E+ ++ P + + +L+ +Y+
Sbjct: 955 LFLDLHMGSHSYLHALATAPIIPVAVEKGWSESASPNVRGPPALVFTFPQMEDRLKAAYK 1014
Query: 670 LTTAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPK 491
TT G+FPEA+ + + +PL++VDS+ E+ E ++L+ + R+Y++GL ME RK +
Sbjct: 1015 ATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKELR- 1073
Query: 490 NTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRP 311
D+ R E+AAYFT+CKLQ VH L L +A+ + +K KN+ TA FAR LLE P
Sbjct: 1074 ---DDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNE 1130
Query: 310 EVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPE 131
A++AR++ Q C D +L YD NPF +CG +Y PIYRG+ + C C + F+P
Sbjct: 1131 AQARRARQVQQQCSGKK-DSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPS 1189
Query: 130 HKGKLCPVCGVAEIGKDALGLRICPLQ 50
+G+LC +C +A +G DA GL P Q
Sbjct: 1190 IEGQLCTICELAVVGADASGLVCSPTQ 1216
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 40.3 bits (90), Expect = 0.002
Identities = 35/182 (19%), Positives = 73/182 (40%), Gaps = 5/182 (2%)
Frame = -3
Query: 604 LLLVDSKAELSEAQQLLAVCRDYLVGLAM--ETAR--KAMPKNTVDEQKRTCEMAAYFTH 437
L L ++ ++ + +C Y + +A+ E AR + + ++ ++ +
Sbjct: 1354 LALAKDQSREADIKAQATICAQYKIAVALLQEIARLQRVQGAGALSAKEEMARLSRHLAS 1413
Query: 436 CKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPT 257
+Q H+I +RTA+ +++N+ A L P P + + ++ C +
Sbjct: 1414 LPIQAKHRINCIRTAIKRNMEVQNFAYAKQMLDLLYSKAP-PSKQDELKSLIDMCVQRGL 1472
Query: 256 DEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGK-D 80
+ E +P C ++ + + C LC A F C +CG+ I + D
Sbjct: 1473 TNKSIDPFE-DPSQFCAVTLSRL-STIGHDVCDLCGAKF-SALSAPGCVICGMGSIKRSD 1529
Query: 79 AL 74
AL
Sbjct: 1530 AL 1531
>05_05_0014 - 21523259-21523612,21523877-21524187,21524256-21524469
Length = 292
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 585 RPSCPRPSSYWPSAGTTSW--DSPWRPPGKR 499
RPS PS YW +AGT W S RP G +
Sbjct: 100 RPSRTTPSGYWKAAGTPGWVYSSDGRPIGTK 130
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 615 CATPCSRSMASGNRPAVVNWXXXXXXXXXXXXFNVMTGRRSFPVASFQF 761
C + S A GN P +VNW F ++ ++ P+ F F
Sbjct: 499 CLSVLGPSTAQGNGPGIVNWSEGGTKMVAHIPFYLLAEQKGAPIHDFSF 547
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 770 PAQELEGSHREGSPACHNVEAKRLGESAAAELPV 669
PA+E S + GSP CH + LG S+ +L V
Sbjct: 653 PAEESICSFKSGSPVCHGNDGPDLGASSIGKLSV 686
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 770 PAQELEGSHREGSPACHNVEAKRLGESAAAELPV 669
PA+E S + GSP CH + LG S+ +L V
Sbjct: 703 PAEESICSFKSGSPVCHGNDGPDLGASSIGKLSV 736
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -3
Query: 322 GPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGIS 200
G + +++ ACE H+ LY NP+ + G+S
Sbjct: 170 GEAKYIGNSGQEMQVACETAKEPSHRALYGSKNPYQLTGLS 210
>04_03_0242 +
13253268-13253317,13254522-13254573,13254654-13254730,
13254804-13254937,13255645-13255815,13255894-13256035,
13256257-13256443,13256932-13256998,13257846-13257892,
13258623-13258629,13258716-13258786,13259229-13259339,
13260404-13260466,13261050-13261187,13261721-13261826,
13262101-13262147,13262416-13262460,13262538-13262604,
13262683-13262737,13263008-13263214,13264723-13264810,
13264940-13265021,13265274-13265320,13265782-13265941,
13266058-13266224,13266360-13266659,13267144-13267200
Length = 914
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 244 LLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEH 128
L+Y +N F +C + Y+P + E + S C+ + EH
Sbjct: 504 LMYKVYNYFGVCKVPYRPTFVCHTEYQTSKCSLKYF-EH 541
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 211 CGISYKPIYRGKPEEKCSLCAASFMPEHKGKLCP 110
CG + P +R PE +LC A M GKL P
Sbjct: 606 CGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVP 639
>05_03_0250 +
10955281-10955419,10955524-10955727,10955985-10956065,
10956147-10956287,10956378-10956410,10956809-10956909,
10957282-10957912,10959378-10959514
Length = 488
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 199 YKPIYRGKPEEKCSLCAASFMPEHKGK 119
+ P+Y G P++ C C A F E + +
Sbjct: 203 FSPLYLGGPDQTCRYCGALFWYEERAR 229
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = -3
Query: 412 ILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYD 233
++T + F +K A S R+ E+ RP + I C+ TD L+D
Sbjct: 614 VVTCNVLIKALFMIKKVDDACSLFLRMPEMRLRPNIVTYHTVIDMMCKLGETDRALQLFD 673
Query: 232 EH 227
++
Sbjct: 674 DY 675
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,609
Number of Sequences: 37544
Number of extensions: 386418
Number of successful extensions: 1770
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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