Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p02
         (846 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075425-1|AAL68241.1| 1234|Drosophila melanogaster LD46584p pro...   368   e-102
AE014296-317|AAF47535.1| 1234|Drosophila melanogaster CG7961-PB,...   368   e-102
AE014296-316|AAF47534.1| 1234|Drosophila melanogaster CG7961-PA,...   368   e-102
AJ011114-1|CAA09492.1| 1234|Drosophila melanogaster coatomer alp...   364   e-101
AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-P...    31   2.0  
AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-P...    31   2.0  

>AY075425-1|AAL68241.1| 1234|Drosophila melanogaster LD46584p protein.
          Length = 1234

 Score =  368 bits (906), Expect = e-102
 Identities = 168/266 (63%), Positives = 212/266 (79%)
 Frame = -3

Query: 844  VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLLPVITLKLSDLVSQLQQSYQLT 665
            +F + +A +R ++ A P+L +L+ Y  RN+ E   K   P + +KL+DLV++LQ  YQLT
Sbjct: 968  LFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQRPAVGIKLNDLVARLQAGYQLT 1027

Query: 664  TAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNT 485
            T+G+F EA+E+   +   +PLL+VD+K + +EAQQLL +C +Y+VGL MET RK MPK+T
Sbjct: 1028 TSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMPKST 1087

Query: 484  VDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEV 305
            ++EQKR CEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNY+TAASFARRLLEL PRP+V
Sbjct: 1088 LEEQKRLCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPRPDV 1147

Query: 304  AQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEHK 125
            AQQ RKILQACE  P DEHQL Y+E NPF+ICGIS+KP+YRGKPE  C  C++SF P+ K
Sbjct: 1148 AQQVRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSSSFDPQFK 1207

Query: 124  GKLCPVCGVAEIGKDALGLRICPLQF 47
            G LC VC V++IGKD++GLRI  LQF
Sbjct: 1208 GNLCTVCEVSQIGKDSIGLRISNLQF 1233


>AE014296-317|AAF47535.1| 1234|Drosophila melanogaster CG7961-PB,
            isoform B protein.
          Length = 1234

 Score =  368 bits (906), Expect = e-102
 Identities = 168/266 (63%), Positives = 212/266 (79%)
 Frame = -3

Query: 844  VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLLPVITLKLSDLVSQLQQSYQLT 665
            +F + +A +R ++ A P+L +L+ Y  RN+ E   K   P + +KL+DLV++LQ  YQLT
Sbjct: 968  LFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQRPAVGIKLNDLVARLQAGYQLT 1027

Query: 664  TAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNT 485
            T+G+F EA+E+   +   +PLL+VD+K + +EAQQLL +C +Y+VGL MET RK MPK+T
Sbjct: 1028 TSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMPKST 1087

Query: 484  VDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEV 305
            ++EQKR CEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNY+TAASFARRLLEL PRP+V
Sbjct: 1088 LEEQKRLCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPRPDV 1147

Query: 304  AQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEHK 125
            AQQ RKILQACE  P DEHQL Y+E NPF+ICGIS+KP+YRGKPE  C  C++SF P+ K
Sbjct: 1148 AQQVRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSSSFDPQFK 1207

Query: 124  GKLCPVCGVAEIGKDALGLRICPLQF 47
            G LC VC V++IGKD++GLRI  LQF
Sbjct: 1208 GNLCTVCEVSQIGKDSIGLRISNLQF 1233


>AE014296-316|AAF47534.1| 1234|Drosophila melanogaster CG7961-PA,
            isoform A protein.
          Length = 1234

 Score =  368 bits (906), Expect = e-102
 Identities = 168/266 (63%), Positives = 212/266 (79%)
 Frame = -3

Query: 844  VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLLPVITLKLSDLVSQLQQSYQLT 665
            +F + +A +R ++ A P+L +L+ Y  RN+ E   K   P + +KL+DLV++LQ  YQLT
Sbjct: 968  LFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQRPAVGIKLNDLVARLQAGYQLT 1027

Query: 664  TAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNT 485
            T+G+F EA+E+   +   +PLL+VD+K + +EAQQLL +C +Y+VGL MET RK MPK+T
Sbjct: 1028 TSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMPKST 1087

Query: 484  VDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEV 305
            ++EQKR CEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNY+TAASFARRLLEL PRP+V
Sbjct: 1088 LEEQKRLCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPRPDV 1147

Query: 304  AQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEHK 125
            AQQ RKILQACE  P DEHQL Y+E NPF+ICGIS+KP+YRGKPE  C  C++SF P+ K
Sbjct: 1148 AQQVRKILQACEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSSSFDPQFK 1207

Query: 124  GKLCPVCGVAEIGKDALGLRICPLQF 47
            G LC VC V++IGKD++GLRI  LQF
Sbjct: 1208 GNLCTVCEVSQIGKDSIGLRISNLQF 1233


>AJ011114-1|CAA09492.1| 1234|Drosophila melanogaster coatomer alpha
            subunit protein.
          Length = 1234

 Score =  364 bits (895), Expect = e-101
 Identities = 167/266 (62%), Positives = 211/266 (79%)
 Frame = -3

Query: 844  VFAEMFAHARVTFGALPSLPALTAYLHRNWKEATGKDLLPVITLKLSDLVSQLQQSYQLT 665
            +F + +A +R ++ A P+L +L+ Y  RN+ E   K   P + +KL+DLV++LQ  YQLT
Sbjct: 968  LFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQRPAVGIKLNDLVARLQAGYQLT 1027

Query: 664  TAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNT 485
            T+G+F EA+E+   +   +PLL+VD+K + +EAQQLL +C +Y+VGL MET RK MPK+T
Sbjct: 1028 TSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQQLLRICAEYIVGLKMETVRKGMPKST 1087

Query: 484  VDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEV 305
            ++EQKR CEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNY+TAASFARRLLEL PRP+V
Sbjct: 1088 LEEQKRLCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYKTAASFARRLLELAPRPDV 1147

Query: 304  AQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMPEHK 125
            AQQ RKILQA E  P DEHQL Y+E NPF+ICGIS+KP+YRGKPE  C  C++SF P+ K
Sbjct: 1148 AQQVRKILQAYEVNPVDEHQLQYEEFNPFTICGISWKPLYRGKPEVTCPFCSSSFDPQFK 1207

Query: 124  GKLCPVCGVAEIGKDALGLRICPLQF 47
            G LC VC V++IGKD++GLRI  LQF
Sbjct: 1208 GNLCTVCEVSQIGKDSIGLRISNLQF 1233


>AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-PD,
            isoform D protein.
          Length = 7210

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 751  EATGKDLLPVITLKLSDLVSQ--LQQSYQLTTAGRFPEAIERLQGVAQRVPLLLVDSKAE 578
            E T  D+   + +    + SQ  LQ++ +L  A  F E +E++Q V   +    +     
Sbjct: 1122 ELTADDIQQGLEITQGTIKSQALLQEAQELEAAKHFSETVEKMQEVPDSMSFATISEANL 1181

Query: 577  LSEAQQLLAVCR 542
             SEA  L  +C+
Sbjct: 1182 PSEASALKDICQ 1193


>AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-PA,
            isoform A protein.
          Length = 9270

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 751  EATGKDLLPVITLKLSDLVSQ--LQQSYQLTTAGRFPEAIERLQGVAQRVPLLLVDSKAE 578
            E T  D+   + +    + SQ  LQ++ +L  A  F E +E++Q V   +    +     
Sbjct: 1122 ELTADDIQQGLEITQGTIKSQALLQEAQELEAAKHFSETVEKMQEVPDSMSFATISEANL 1181

Query: 577  LSEAQQLLAVCR 542
             SEA  L  +C+
Sbjct: 1182 PSEASALKDICQ 1193


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,724,915
Number of Sequences: 53049
Number of extensions: 607094
Number of successful extensions: 2486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2483
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)