Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p02
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 275 2e-74
Z68493-5|CAA92800.1| 237|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 28 7.3
U55855-3|AAA98019.2| 893|Caenorhabditis elegans Ubiquitin-like ... 28 7.3
AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein. 28 7.3
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 28 7.3
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 28 9.6
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 28 9.6
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 275 bits (675), Expect = 2e-74
Identities = 133/268 (49%), Positives = 187/268 (69%), Gaps = 3/268 (1%)
Frame = -3
Query: 844 VFAEMFAHARVTFGALPSL-PALTAYLH--RNWKEATGKDLLPVITLKLSDLVSQLQQSY 674
VF + +A +R++ L PA +H RN++E K+ LPV KLS L +LQ++Y
Sbjct: 966 VFVKAYAASRLSHRGWGGLGPAGPVSIHPVRNFQE--DKNHLPVAAFKLSQLAKKLQKAY 1023
Query: 673 QLTTAGRFPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMP 494
Q+TT G+F +A+E+L+ + VPL++V SK E++EA+QL+ + R+YL L +ET RK +P
Sbjct: 1024 QMTTNGKFGDAVEKLREILLSVPLIVVSSKQEVAEAEQLITITREYLAALLLETYRKDLP 1083
Query: 493 KNTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPR 314
K +++ KR E+AAYFTH +LQP+H+ILTLR+A+N FFK+K +T AS +RLLEL P+
Sbjct: 1084 KTNLEDAKRNAELAAYFTHFELQPMHRILTLRSAINTFFKMKQMKTCASLCKRLLELAPK 1143
Query: 313 PEVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKPEEKCSLCAASFMP 134
PEVA Q RK+L A EK TD HQL YDEHNPF +C + P+YRG+P KC C AS+
Sbjct: 1144 PEVAAQIRKVLTAAEKDNTDAHQLTYDEHNPFVVCSRQFVPLYRGRPLCKCPYCGASYSE 1203
Query: 133 EHKGKLCPVCGVAEIGKDALGLRICPLQ 50
+G++C VC VAE+GK+ LGLRI L+
Sbjct: 1204 GLEGEVCNVCQVAEVGKNVLGLRISTLK 1231
>Z68493-5|CAA92800.1| 237|Caenorhabditis elegans Hypothetical
protein C33A12.7 protein.
Length = 237
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 416 VHGLELAVREVGGHLAGTFLFVDGVLRHRFPG 511
+ GL+L VRE GH G +V+ LR F G
Sbjct: 108 IGGLKLEVRETPGHTNGCLTYVEHSLRSAFTG 139
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 28.3 bits (60), Expect = 7.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 136 PEHKGKLCPVCG 101
P H+G++CPVCG
Sbjct: 11 PNHEGEMCPVCG 22
>U55855-3|AAA98019.2| 893|Caenorhabditis elegans Ubiquitin-like
protease protein 2 protein.
Length = 893
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 652 FPEAIERLQGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVGLAMETA-RKAMPKNTVDE 476
FPEA + + +V L++ +A+ +L R+ GL+ E A RKA + V+E
Sbjct: 776 FPEANKMCDLMRDKVYNLILQ-QADKPARSRLAKFERENKCGLSREGALRKARRHSAVNE 834
Query: 475 QKRTCEMAAYFTHCKLQPVHQ 413
++ Y H L P H+
Sbjct: 835 RRTKRHRDYYARHYSLSPPHR 855
>AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein.
Length = 233
Score = 28.3 bits (60), Expect = 7.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 136 PEHKGKLCPVCG 101
P H+G++CPVCG
Sbjct: 11 PNHEGEMCPVCG 22
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 28.3 bits (60), Expect = 7.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 136 PEHKGKLCPVCG 101
P H+G++CPVCG
Sbjct: 7 PNHEGEMCPVCG 18
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 27.9 bits (59), Expect = 9.6
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = -3
Query: 808 FGALPSLPALTAYLHRNWKEATGKDLLPVITLKLSDLVSQLQQSYQLTTAGRFPEAIERL 629
FG+ + + A LH +K + L V L SDL L + + L AGR PEA+
Sbjct: 386 FGSSKDVALIEATLH--FKMGDAEAALKV--LAGSDLEQSLARLHVLLNAGRLPEAV--- 438
Query: 628 QGVAQRVPLLLVDSKAELSEAQQLLAVCRDYLVG--LAMETARKAMPK 491
G + +P+ + L + + A RD V +A TA+ P+
Sbjct: 439 -GAIRDLPISGKLGASSLLTSTLIAADSRDEAVKELVAASTAKNQTPE 485
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 591 TPRPSCPRPSSYWPSAGTTSWDSPWRPPGKRCRRTPSTNRNVP 463
T P + SS + T +PW PP R+TP T + P
Sbjct: 378 TQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPP 420
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,793
Number of Sequences: 27780
Number of extensions: 281814
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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