Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o24
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 27 0.19
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 27 0.19
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 25 0.76
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 0.76
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 25 0.76
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 25 0.76
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 23 3.1
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 7.1
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 7.1
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 7.1
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 7.1
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 7.1
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 9.3
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 9.3
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 9.3
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 9.3
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 27.1 bits (57), Expect = 0.19
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 283 LDLRNSRTSRSDSGPVLGSIK-HTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLIS 456
LDLRN+ R +S L HT+ LS N+ + + + G+ LN + + N++ S
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELS-DNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 27.1 bits (57), Expect = 0.19
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 396 CRGQWHVAIRSRQHDCVLDRPQHGA--AVRTRGARIAQI 286
C G + V + S + LD P H A ++R RGA I I
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFISMRHRGAHITDI 219
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 25.0 bits (52), Expect = 0.76
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 638 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 528
K Q + KP + +V N G IFLG YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.0 bits (52), Expect = 0.76
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 530 DYGVKSPNAAS-TSSNVTMTRGTAN 459
+Y + +AAS TSS V +TRGT N
Sbjct: 6 NYALDVSSAASKTSSKVMLTRGTVN 30
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 25.0 bits (52), Expect = 0.76
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 638 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 528
K Q + KP + +V N G IFLG YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 25.0 bits (52), Expect = 0.76
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 638 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 528
K Q + KP + +V N G IFLG YD
Sbjct: 113 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 149
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 403 VGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAF-GDL 519
+G +P+N IN+ L I ++ +LL ++ A+ GD+
Sbjct: 72 IGSVPVNNINLILLQNIIDICWITMVYSLLGIIIAYTGDV 111
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 104 NYNNNYNNNYK 114
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 104 NYNNNYNNNYK 114
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 100 NYNNNYNTNYK 110
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 96 NYNNNYNTNYK 106
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 15 NLRNNYN*NYK 47
N NNYN NYK
Sbjct: 339 NYNNNYNNNYK 349
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 77 NRNDLNTSCTKFCMLINNIE 136
N N+ N +C K IN IE
Sbjct: 101 NNNNYNNNCKKLYYNINYIE 120
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 77 NRNDLNTSCTKFCMLINNIE 136
N N+ N +C K IN IE
Sbjct: 101 NNNNYNNNCKKLYYNINYIE 120
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 77 NRNDLNTSCTKFCMLINNIE 136
N N+ N +C K IN IE
Sbjct: 101 NNNNYNNNCKKLYYNINYIE 120
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 77 NRNDLNTSCTKFCMLINNIE 136
N N+ N +C K IN IE
Sbjct: 101 NNNNYNNNCKKLYYNINYIE 120
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,093
Number of Sequences: 438
Number of extensions: 5102
Number of successful extensions: 31
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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