Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o23
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   2.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   2.2  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   3.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   5.0  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 429 GVSQCNILKNIKFKTEFT 376
           G+S+   LKNIKF+ EFT
Sbjct: 564 GLSRSGSLKNIKFRYEFT 581


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +2

Query: 47  VLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLL 142
           +L +++ +ML  +LR+  +G  NHT ++KCLL
Sbjct: 418 ILWLWLFRML--NLRIASMG-NNHTLLEKCLL 446


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 123 TWTSAFCAAFFWSVALCPCCFFILD 197
           TW +AF   F  +  L  C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 62  VLKMLFVSLRVRHLGLTNHTNMDKC 136
           ++++LF S++ R LG+  H+    C
Sbjct: 146 LVRLLFPSIKTRRLGMRGHSKYHYC 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,639
Number of Sequences: 5004
Number of extensions: 29949
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)