Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o23
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 77 5e-15
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 77 5e-15
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 34 0.038
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 34 0.038
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 30 0.61
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 30 0.61
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 1.4
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 1.4
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 29 1.9
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 29 1.9
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 29 1.9
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 28 2.5
AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 28 3.3
AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical ... 27 4.3
U23525-7|AAC46569.1| 557|Caenorhabditis elegans Yeast smf (diva... 27 5.7
Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 26 10.0
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 26 10.0
Z71178-16|CAD44088.1| 328|Caenorhabditis elegans Hypothetical p... 26 10.0
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 26 10.0
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 26 10.0
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 26 10.0
U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine rece... 26 10.0
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 26 10.0
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 26 10.0
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 26 10.0
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 26 10.0
AL021478-2|CAF32232.1| 328|Caenorhabditis elegans Hypothetical ... 26 10.0
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 26 10.0
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 77.0 bits (181), Expect = 5e-15
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = -3
Query: 250 MARGHQKIXXXXXXXXXXXXXXXXQGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 71
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 70 FENKHPKNDLPDDL 29
FENKHPK+ LP +L
Sbjct: 57 FENKHPKSPLPAEL 70
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 77.0 bits (181), Expect = 5e-15
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = -3
Query: 250 MARGHQKIXXXXXXXXXXXXXXXXQGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 71
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 70 FENKHPKNDLPDDL 29
FENKHPK+ LP +L
Sbjct: 57 FENKHPKSPLPAEL 70
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.038
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKH 56
HVCV+C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 33.9 bits (74), Expect = 0.050
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKH 56
H+C++C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 30.7 bits (66), Expect = 0.46
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKH 56
H C++C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.038
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKH 56
HVCV+C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 33.9 bits (74), Expect = 0.050
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKH 56
H+C++C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 30.7 bits (66), Expect = 0.46
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKH 56
H C++C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 30.3 bits (65), Expect = 0.61
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -3
Query: 250 MARGHQKIXXXXXXXXXXXXXXXXQGHSATDQKKAAQKALVHVCVVC 110
MARGHQK G +DQK AA +L H C VC
Sbjct: 1 MARGHQKALSQQRNAEKTAKAKKAVG---SDQKNAAMASLHHKCTVC 44
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 30.3 bits (65), Expect = 0.61
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 127 HVCVVCKAQMPDPKTYKQHFENKHPK 50
H+C +C + P P+ HF H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 254 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 129
H+G +PE + + GK ++E T +P ESCT+G TC
Sbjct: 759 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 800
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 254 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 129
H+G +PE + + GK ++E T +P ESCT+G TC
Sbjct: 856 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 897
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 166 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 44
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -3
Query: 145 AQKALVHVCVVCKAQMPDPKTYKQHFENKH 56
+ A VC +C A + + + Y QH + H
Sbjct: 707 SSSAPTFVCEICDASVQEKEKYLQHLQTTH 736
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 166 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 44
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -3
Query: 145 AQKALVHVCVVCKAQMPDPKTYKQHFENKH 56
+ A VC +C A + + + Y QH + H
Sbjct: 707 SSSAPTFVCEICDASVQEKEKYLQHLQTTH 736
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 157 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 32
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 157 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 32
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 172 HSAT-DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKH 56
HSA+ ++ + + H C++C+ + +T ++H N+H
Sbjct: 36 HSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEH 75
>AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical
protein Y39B6A.27 protein.
Length = 473
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 57 CLFSKCCL*VLGSGIWALQTTQTWTSAFCAAFFWSVALCPCCFF 188
C S CC+ + S I AL + +F A + C CFF
Sbjct: 368 CGMSDCCINSVRSVICALVMPSRRSQSFAVARMYHAFACTICFF 411
>AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical
protein Y57A10C.11 protein.
Length = 262
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 72 CCL*VLGSG-IWALQTTQTWTSAFCAAFFWSVALCPCCFFILDI 200
CCL +GSG +W + + W F+W L P L+I
Sbjct: 55 CCL--VGSGWMWVVDNKRKWYIRSIRRFYWHRILMPTAVVCLNI 96
>U23525-7|AAC46569.1| 557|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 1, isoform
a protein.
Length = 557
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 39 GRSFLGCLFSKCCL*VLGSGIWALQTTQTWTSAFCAAF 152
G +LGC F + + G GI+A + T T + F
Sbjct: 341 GGIYLGCQFGAIAMFIWGIGIFAAGQSSTMTGTYTGQF 378
>Z81589-3|CAB04719.1| 256|Caenorhabditis elegans Hypothetical
protein T08G5.7 protein.
Length = 256
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 121 CVVCKAQMPDPKTYKQHFENKHPKNDL 41
C VC+ +P K K H KH K +
Sbjct: 79 CPVCELVIPTEKGLKNHMNQKHRKKPI 105
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 169 SATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPK 50
S + + A +K++ C VCK + + ++H + HPK
Sbjct: 99 SIDEIRNAVRKSMFR-CKVCKNRFGEMSLLERHLRDSHPK 137
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 147 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 184
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>Z71178-16|CAD44088.1| 328|Caenorhabditis elegans Hypothetical
protein B0024.14c protein.
Length = 328
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 147 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 184
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 123 FVWFVRPRCLTLRLTNSILRTNTLRTIYQMT 31
F+WF + NS++ TL T+YQ T
Sbjct: 691 FIWFFAGPACFIFCANSLVLVKTLCTVYQHT 721
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 123 FVWFVRPRCLTLRLTNSILRTNTLRTIYQMT 31
F+WF + NS++ TL T+YQ T
Sbjct: 693 FIWFFAGPACFIFCANSLVLVKTLCTVYQHT 723
>U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 2 protein.
Length = 347
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 35 IW*IVLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLLCSF 151
+W V+ + + L++ L R L L H N+ L+C F
Sbjct: 30 LWTFVVSILAIPALYIFLMKRILPLPFHGNIKFLLVCYF 68
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 123 FVWFVRPRCLTLRLTNSILRTNTLRTIYQMT 31
F+WF + NS++ TL T+YQ T
Sbjct: 691 FIWFFAGPACFIFCANSLVLVKTLCTVYQHT 721
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 123 FVWFVRPRCLTLRLTNSILRTNTLRTIYQMT 31
F+WF + NS++ TL T+YQ T
Sbjct: 693 FIWFFAGPACFIFCANSLVLVKTLCTVYQHT 723
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>AL021478-2|CAF32232.1| 328|Caenorhabditis elegans Hypothetical
protein B0024.14c protein.
Length = 328
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 239 TPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 126
T E + G D+ + A +CH+ E+ C CP
Sbjct: 81 TKEERLVMVEKGSDIPGKCCAYYECHKKEKKCENVHCP 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,452
Number of Sequences: 27780
Number of extensions: 178260
Number of successful extensions: 567
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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