Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o22
(769 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein. 32 2.0
D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator... 32 2.0
AL359076-5|CAI12969.1| 559|Homo sapiens SWI/SNF related, matrix... 32 2.0
AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix... 32 2.0
AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix... 32 2.0
AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix... 32 2.0
AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix... 32 2.0
AK128631-1|BAC87539.1| 544|Homo sapiens protein ( Homo sapiens ... 31 4.5
AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1... 31 4.5
AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein. 31 4.5
L41690-1|AAA98482.1| 328|Homo sapiens tumor necrosis factor rec... 31 6.0
BT006934-1|AAP35580.1| 312|Homo sapiens TNFRSF1A-associated via... 31 6.0
BC004491-1|AAH04491.1| 312|Homo sapiens TNFRSF1A-associated via... 31 6.0
AY995114-1|AAX89407.1| 312|Homo sapiens tumor necrosis factor r... 31 6.0
AY575851-1|AAS68637.1| 312|Homo sapiens TNFRSF1A-associated via... 31 6.0
AJ311614-1|CAC38018.2| 312|Homo sapiens TNFRSF1A-associated via... 31 6.0
AB037830-1|BAA92647.2| 2461|Homo sapiens KIAA1409 protein protein. 31 6.0
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel... 30 7.9
L15296-1|AAA65620.1| 909|Homo sapiens cyclic nucleotide-gated c... 30 7.9
AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein. 30 7.9
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein. 30 7.9
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c... 30 7.9
AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein. 30 7.9
>X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.
Length = 1586
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 289 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 331
>D26155-1|BAA05142.1| 1572|Homo sapiens transcriptional activator
hSNF2a protein.
Length = 1572
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 293 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 335
>AL359076-5|CAI12969.1| 559|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 559
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 293 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 335
>AL359076-4|CAI12968.1| 1572|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1572
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 293 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 335
>AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1590
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 293 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 335
>AL138755-9|CAI14600.1| 1572|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1572
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 293 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 335
>AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1590
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 700 APLQPPLVDLPAEMLPPPAPSLSNVLSELKSGTVRLKPAQKRPQ 569
A QPP +P +P PAP + + +L+ R+ P QK PQ
Sbjct: 293 AAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK-PQ 335
>AK128631-1|BAC87539.1| 544|Homo sapiens protein ( Homo sapiens
cDNA FLJ46790 fis, clone TRACH3029329. ).
Length = 544
Score = 31.1 bits (67), Expect = 4.5
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -1
Query: 526 ADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTN 347
A+ +N+ V M + S S + ++ + N D ++ L + ++ Q+
Sbjct: 165 AECRTSQLNKATVKMEEYSDLLKSTEAWIENTSHLLANPADYDSLRTLSHHASTVQMALE 224
Query: 346 DSDEKNTKAHNILNDVESL 290
DS++K+ H+I D+E L
Sbjct: 225 DSEQKHNLLHSIFTDLEDL 243
>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
protein.
Length = 3530
Score = 31.1 bits (67), Expect = 4.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -1
Query: 703 SAPLQPPLVDLPAEMLPPPAPSLSNVLSEL 614
SA L PP+ P PPPAP LS LS L
Sbjct: 658 SALLSPPVPPRPPSSGPPPAPPLSPALSGL 687
>AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.
Length = 1103
Score = 31.1 bits (67), Expect = 4.5
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -1
Query: 703 SAPLQPPLVDLPAEMLPPPAPSLSNVLSEL 614
SA L PP+ P PPPAP LS LS L
Sbjct: 535 SALLSPPVPPRPPSSGPPPAPPLSPALSGL 564
>L41690-1|AAA98482.1| 328|Homo sapiens tumor necrosis factor
receptor type 1 associated protein protein.
Length = 328
Score = 30.7 bits (66), Expect = 6.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAP 641
+++SAPLQPP+ L +E+ PPP P
Sbjct: 190 EVASAPLQPPVPSL-SEVKPPPPP 212
>BT006934-1|AAP35580.1| 312|Homo sapiens TNFRSF1A-associated via
death domain protein.
Length = 312
Score = 30.7 bits (66), Expect = 6.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAP 641
+++SAPLQPP+ L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196
>BC004491-1|AAH04491.1| 312|Homo sapiens TNFRSF1A-associated via
death domain protein.
Length = 312
Score = 30.7 bits (66), Expect = 6.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAP 641
+++SAPLQPP+ L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196
>AY995114-1|AAX89407.1| 312|Homo sapiens tumor necrosis factor
receptor 1-associated death domain protein protein.
Length = 312
Score = 30.7 bits (66), Expect = 6.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAP 641
+++SAPLQPP+ L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196
>AY575851-1|AAS68637.1| 312|Homo sapiens TNFRSF1A-associated via
death domain protein.
Length = 312
Score = 30.7 bits (66), Expect = 6.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAP 641
+++SAPLQPP+ L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196
>AJ311614-1|CAC38018.2| 312|Homo sapiens TNFRSF1A-associated via
death domain, TRADD protein.
Length = 312
Score = 30.7 bits (66), Expect = 6.0
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAP 641
+++SAPLQPP+ L +E+ PPP P
Sbjct: 174 EVASAPLQPPVPSL-SEVKPPPPP 196
>AB037830-1|BAA92647.2| 2461|Homo sapiens KIAA1409 protein protein.
Length = 2461
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 484 MAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQ-ALFNVFTSSQLYTNDSDEKNTKAHNIL 308
M + SS A + D G + ++ + + ++ V T SQL + +++ HNI
Sbjct: 1707 MPRESSSAPTLDAGVPETSSHSSISTQYRQMKRGSLGVLTMSQLMKRQLEHQSSAPHNIS 1766
Query: 307 N-DVESLLQNKTQTNI 263
N D E + K Q N+
Sbjct: 1767 NWDTEQIQPGKRQCNV 1782
>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel
beta subunit protein.
Length = 1251
Score = 30.3 bits (65), Expect = 7.9
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAPSLSN--VLSELKSGTVRLK-PAQKRPQSEIIPKNST 542
D S PL + P+ +LPPP+P+ S+ ++ SGT R K P++ E+ +
Sbjct: 473 DADSCPLMAE-ENPPSTVLPPPSPAKSDTLIVPSSASGTHRKKLPSEDDEAEELKALSPA 531
Query: 541 TKNLIA----DVLVDTINRRRVAMAKSSSEATSND 449
++A DT + R A S++ A ND
Sbjct: 532 ESPVVAWSDPTTPKDTDGQDRAASTASTNSAIIND 566
>L15296-1|AAA65620.1| 909|Homo sapiens cyclic nucleotide-gated
cation channel protein.
Length = 909
Score = 30.3 bits (65), Expect = 7.9
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAPSLSN--VLSELKSGTVRLK-PAQKRPQSEIIPKNST 542
D S PL + P+ +LPPP+P+ S+ ++ SGT R K P++ E+ +
Sbjct: 131 DADSCPLMAE-ENPPSTVLPPPSPAKSDTLIVPSSASGTHRKKLPSEDDEAEELKALSPA 189
Query: 541 TKNLIA----DVLVDTINRRRVAMAKSSSEATSND 449
++A DT + R A S++ A ND
Sbjct: 190 ESPVVAWSDPTTPKDTDGQDRAASTASTNSAIIND 224
>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
Length = 6884
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -1
Query: 526 ADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTN 347
A+ +N+ V M + S S + ++ + N D ++ L + ++ Q+
Sbjct: 3772 AECRTSQLNKATVKMEEYSDLLKSTEAWIENTSHLLANPADYDSLRTLSHHASTVQMALE 3831
Query: 346 DSDEKNTKAHNILNDVESL 290
DS++K+ H+I D+E L
Sbjct: 3832 DSEQKHNLLHSIFMDLEDL 3850
>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
Length = 6885
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -1
Query: 526 ADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTN 347
A+ +N+ V M + S S + ++ + N D ++ L + ++ Q+
Sbjct: 3773 AECRTSQLNKATVKMEEYSDLLKSTEAWIENTSHLLANPADYDSLRTLSHHASTVQMALE 3832
Query: 346 DSDEKNTKAHNILNDVESL 290
DS++K+ H+I D+E L
Sbjct: 3833 DSEQKHNLLHSIFMDLEDL 3851
>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
CNG-channel beta subunit protein.
Length = 1245
Score = 30.3 bits (65), Expect = 7.9
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = -1
Query: 712 DLSSAPLQPPLVDLPAEMLPPPAPSLSN--VLSELKSGTVRLK-PAQKRPQSEIIPKNST 542
D S PL + P+ +LPPP+P+ S+ ++ SGT R K P++ E+ +
Sbjct: 467 DADSCPLMAE-ENPPSTVLPPPSPAKSDTLIVPSSASGTHRKKLPSEDDEAEELKALSPA 525
Query: 541 TKNLIA----DVLVDTINRRRVAMAKSSSEATSND 449
++A DT + R A S++ A ND
Sbjct: 526 ESPVVAWSDPTTPKDTDGQDRAASTASTNSAIIND 560
>AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein.
Length = 3541
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -1
Query: 526 ADVLVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTN 347
A+ +N+ V M + S S + ++ + N D ++ L + ++ Q+
Sbjct: 407 AECRTSQLNKATVKMEEYSDLLKSTEAWIENTSHLLANPADYDSLRTLSHHASTVQMALE 466
Query: 346 DSDEKNTKAHNILNDVESL 290
DS++K+ H+I D+E L
Sbjct: 467 DSEQKHNLLHSIFMDLEDL 485
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,053,643
Number of Sequences: 237096
Number of extensions: 1920438
Number of successful extensions: 7404
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7322
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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