Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o22
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.1  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   7.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 558 IISDCGRFCAGFNLTVPDFNSDNTLESDGAGGGNISAGKSTNGGCNG 698
           ++  C  +C   NL  P  +S   + + GA GG+I  G +  GG  G
Sbjct: 7   VVMSCCCWCCD-NLGGPGSSSAGGVVT-GASGGSIVVGANNGGGGGG 51


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 598 RLKPAQKRPQSEIIPKNSTTKNLIADVLVDTINRRRV 488
           R+  + + P   +   N  TKN ++   +DT NR+++
Sbjct: 24  RIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPNRQKI 60


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 535 NLIADVLVDTINRRRVAMAKSSSEATSNDEGW 440
           +L++ VL+DT    ++   K    A +N  GW
Sbjct: 11  SLVSVVLLDTTQEEKLEWTKYPFGAEANTPGW 42


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 591 FNLTVPDFNSDNTLESDG 644
           FNL   D NS N LES G
Sbjct: 118 FNLLRADANSVNELESQG 135


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 480 QNRLRKQLLTTRVGTTAAIIG 418
           Q+ + KQLL +R  T AAI G
Sbjct: 4   QDYVDKQLLASRCVTKAAIAG 24


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 186 FTIQIRRRTLYY 197


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 186 FTIQIRRRTLYY 197


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 186 FTIQIRRRTLYY 197


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 186 FTIQIRRRTLYY 197


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 186 FTIQIRRRTLYY 197


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 186 FTIQIRRRTLYY 197


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 254 FTIQIRRRTLYY 265


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 283 FVIKIRRRSKYY 318
           F I+IRRR+ YY
Sbjct: 254 FTIQIRRRTLYY 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,361
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)