Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o18
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...   194   1e-50
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    27   1.7  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   5.1  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    25   6.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.8  

>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score =  194 bits (472), Expect = 1e-50
 Identities = 85/144 (59%), Positives = 110/144 (76%)
 Frame = -1

Query: 440 TDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKR 261
           +DFY+RYY GH G+FGHEFLEF++  DG  RYANNSNY+ND++IRKE +V   V+ E++R
Sbjct: 2   SDFYVRYYSGHHGRFGHEFLEFDYHSDGLARYANNSNYRNDSLIRKEMFVSELVLKEVQR 61

Query: 260 IIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGF 81
           I+ DSEI+ E D  WP  ++ G+QELEI +  +HI F T K GSL DV  S DPEGL+ F
Sbjct: 62  IVDDSEIIKESDESWPPENKDGKQELEIRMNGKHIMFETCKLGSLADVQNSDDPEGLKVF 121

Query: 80  YYLVQDLKCLVFSLIGLHFKIKPI 9
           YYL+QDLK L FSLI L+FK++P+
Sbjct: 122 YYLIQDLKALCFSLISLNFKLRPV 145


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 419 YVGHKGKFGHEFLEFEFRPD-GKLRYANNSNYKNDTMIR 306
           +V  KG F H  LEF   PD G    ANN   +N  +++
Sbjct: 13  WVKSKGAFVHPSLEFSVIPDAGSCVLANNDINENTVLLK 51


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 263 FLIRPLHKGEHRLLYVSLYRFY 328
           F+I+ +H  EH+ L   LY +Y
Sbjct: 376 FIIKTIHHSEHKFLREILYDYY 397


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 352 SFPSGRNSNSRNSWPNFPLC 411
           SFP     NS   +PN P+C
Sbjct: 44  SFPKASKPNSNQPYPNGPVC 63


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +3

Query: 231 FMHDFGINYDSF*FVHYTRVNIGFFTYHCIVFIVGIIGITQFPVRPEFKFEKFVAKLSLV 410
           ++H FG  Y+SF      RV    F     + +  + GIT   +      +  +  +  V
Sbjct: 442 YLHLFGSIYNSF---REERVMFWIFP----IAVQFMRGITVGVIGSSGSAQLAIFFILEV 494

Query: 411 SNIISYVKIRRHFAQSFKFILENF 482
           +N+++Y  +R HF Q+    L  F
Sbjct: 495 ANVVAYAYVRPHFPQTSMNTLNTF 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,214
Number of Sequences: 5004
Number of extensions: 52198
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)