Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o18
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                      223   1e-58
04_01_0040 - 461877-462484,463099-463399                               27   9.2  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score =  223 bits (544), Expect = 1e-58
 Identities = 102/126 (80%), Positives = 111/126 (88%)
 Frame = -1

Query: 437 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRI 258
           +FY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +V P V+ E +RI
Sbjct: 16  EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRI 75

Query: 257 IIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGFY 78
           I +SEIM EDD  WP+PDRVGRQELEIV+G EHISFTTSK GSLVDV  S+DPEGLR FY
Sbjct: 76  IQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFY 135

Query: 77  YLVQDL 60
           YLVQ L
Sbjct: 136 YLVQVL 141


>04_01_0040 - 461877-462484,463099-463399
          Length = 302

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 281 HKGEHRLLYVSLYRFYSWNYWHNAVSRQAGIQIR 382
           H+ EH+L+ + + RF+ W   HN     A  ++R
Sbjct: 42  HEKEHQLMMMMMDRFHRWMATHNRSYASADEKLR 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,932,089
Number of Sequences: 37544
Number of extensions: 293165
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)