Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o18
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81108-3|CAB03239.1| 152|Caenorhabditis elegans Hypothetical pr... 254 4e-68
AF007861-1|AAB66721.1| 147|Caenorhabditis elegans ce-Mago protein. 252 1e-67
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 30 1.2
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 29 2.1
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 29 2.1
AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical ... 29 3.6
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 4.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 4.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 4.8
Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z70037-1|CAA93878.1| 493|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical ... 28 6.3
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 27 8.3
AC024090-4|AAK67221.1| 300|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z81108-3|CAB03239.1| 152|Caenorhabditis elegans Hypothetical
protein R09B3.5 protein.
Length = 152
Score = 254 bits (622), Expect = 4e-68
Identities = 115/145 (79%), Positives = 126/145 (86%)
Frame = -1
Query: 443 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 264
+ DFY+RYYVGHKGKFGHEFLEFEFRP+G LRYANNSNYKNDTMIRKEA V V+ ELK
Sbjct: 8 AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYANNSNYKNDTMIRKEATVSESVLSELK 67
Query: 263 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 84
RII DSEIM EDD WP+PD++GRQELEI+ EHISFTT K G+L DVN S+DP+GLR
Sbjct: 68 RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 127
Query: 83 FYYLVQDLKCLVFSLIGLHFKIKPI 9
FYYLVQDLKCLVFSLIGLHFKIKPI
Sbjct: 128 FYYLVQDLKCLVFSLIGLHFKIKPI 152
>AF007861-1|AAB66721.1| 147|Caenorhabditis elegans ce-Mago protein.
Length = 147
Score = 252 bits (618), Expect = 1e-67
Identities = 114/145 (78%), Positives = 125/145 (86%)
Frame = -1
Query: 443 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 264
+ DFY+RYYVGHKGKFGHEFLEFEFRP+G LRY NNSNYKNDTMIRKEA V V+ ELK
Sbjct: 3 AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYGNNSNYKNDTMIRKEATVSESVLSELK 62
Query: 263 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 84
RII DSEIM EDD WP+PD++GRQELEI+ EHISFTT K G+L DVN S+DP+GLR
Sbjct: 63 RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 122
Query: 83 FYYLVQDLKCLVFSLIGLHFKIKPI 9
FYYLVQDLKCLVFSLIGLHFKIKPI
Sbjct: 123 FYYLVQDLKCLVFSLIGLHFKIKPI 147
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 122 DVNQSRDPEGLRGFYYLVQDLKCLVFSLIGL 30
++ Q P L FYY KCL F+ +GL
Sbjct: 477 EMTQGEGPSALTRFYYDASQRKCLAFNYLGL 507
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 588 NLKFNSEINLTDNLCLRVFSSLSNFLLVYQ 499
N KF+ EI LTDN FS S LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 588 NLKFNSEINLTDNLCLRVFSSLSNFLLVYQ 499
N KF+ EI LTDN FS S LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 588 NLKFNSEINLTDNLCLRVFSSLSNFLLVYQ 499
N KF+ EI LTDN FS S LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 588 NLKFNSEINLTDNLCLRVFSSLSNFLLVYQ 499
N KF+ EI LTDN FS S LL+Y+
Sbjct: 755 NKKFDEEIKLTDNNDFVQFSMRSESLLIYR 784
>AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical
protein K12C11.7 protein.
Length = 166
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 342 GITQFPVRPEFKFEKFVAKLSLVSNIISYVKIRRHFAQSFKFILENF 482
GI + P PE +A SL + + RHFA SF F L+NF
Sbjct: 74 GIWEIPEEPEPSPRGKLA--SLAPFTMESISSWRHFASSFLFFLQNF 118
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 149 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 60
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 149 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 60
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 149 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 60
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 149 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 60
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical
protein C06B8.6 protein.
Length = 346
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 93 SSWVLLFSSRP*MSSILFNWATF 25
S WV++F + P MSS+ F+ TF
Sbjct: 43 SGWVIVFKTPPSMSSVKFSLLTF 65
>Z70037-1|CAA93878.1| 493|Caenorhabditis elegans Hypothetical
protein T27D12.1 protein.
Length = 493
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 288 VNIGFFTYHCIVFIVGIIGITQFPVRPEF--KFEKFVAKLSLVSNIISYVKI 437
+ +GF+ + + F+ G FPV F K+ F VS++++YV++
Sbjct: 127 IRMGFYYFLAVRFLQGFAFAANFPVIGSFCAKWSYFKQNGLFVSSLVAYVQL 178
>AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical
protein Y59A8B.3 protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 278 LHKGEHRLLYVSLYRFYSWNYWHNAVSRQAG-IQIREIRGQTFPCVQHNIV 427
+ K + RL YV + Y + + + I+ R++ + PCV H+I+
Sbjct: 131 IFKSKRRLFYVMFHYVYGFTFTLPLLIHPPDQIEARKMAKEALPCVPHSII 181
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 221 LWPQPDRVGRQELEIVIGEEH 159
L+PQP V + LE +IGEEH
Sbjct: 285 LFPQPGFVQFENLEHIIGEEH 305
>AC024090-4|AAK67221.1| 300|Caenorhabditis elegans Hypothetical
protein C52E2.7 protein.
Length = 300
Score = 27.5 bits (58), Expect = 8.3
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +3
Query: 384 KFVAKLSL-VSNIISYVKIRRHFAQSFKFILENF---HF-SGSTDTLKENYSMMRKPSNT 548
+F+A+ + + +II+ I+ + A+ F F N HF +GS +LKE M + +
Sbjct: 176 EFLAECVIGLDDIIASNAIKTNIARPFSFSNLNLFLRHFINGSNPSLKEMNIAMEEGTFE 235
Query: 549 NYQ---LN*FQN*TSDYTRVF 602
NY+ LN TS+++R++
Sbjct: 236 NYEKVLLNGINYRTSNFSRIY 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,177
Number of Sequences: 27780
Number of extensions: 281384
Number of successful extensions: 705
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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