Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o17
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    29   3.6  
04_03_0644 + 18337757-18337947,18339113-18339344                       28   8.3  

>07_03_1723 -
           29038701-29039213,29039341-29039413,29039504-29039594,
           29039684-29039741,29039829-29039905,29040004-29040214,
           29040339-29040386,29042496-29042608,29043270-29043341,
           29044372-29046336,29046434-29046641,29046847-29047165,
           29047813-29047937,29048024-29048157,29049089-29049164,
           29049276-29049428,29049829-29050532,29050636-29050811,
           29050945-29051107,29051199-29051341,29051802-29051914,
           29053113-29053237,29053867-29054016,29054753-29054921,
           29055201-29055418,29055499-29055709
          Length = 2135

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 251 ECCKKELRDYIKGENSFNVAFKNCESILCRRISFQXGADD 132
           +CCK+     +  +N+ N+   + + I C  + FQ  +DD
Sbjct: 201 DCCKEGTHIVLSKKNTLNILSSDFKEICCMPLLFQLWSDD 240


>04_03_0644 + 18337757-18337947,18339113-18339344
          Length = 140

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 575 STTETFQRLRNKNLTTLN 522
           ++TE FQR+ N NLTT+N
Sbjct: 42  TSTERFQRMLNANLTTIN 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,999,629
Number of Sequences: 37544
Number of extensions: 245202
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)