Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o16
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92835-6|CAB07399.1|  496|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z75526-8|CAA99773.1|  496|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF221132-1|AAF82410.1|  498|Caenorhabditis elegans diacylglycero...    29   5.3  
Z50795-3|CAA90664.1|  200|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z92835-6|CAB07399.1|  496|Caenorhabditis elegans Hypothetical
           protein H19N07.4 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 625 FSDTWNFNFVAFDNIHVYRTVSTNYF*RITGF*GTFLVPEAKLDHIFSKDVPHKSYRRW 801
           F  +WN     F   H+Y  +  N F +++ F   F V  +   H +   VP K +R W
Sbjct: 375 FWKSWNIPVHRFAVRHIYSPMMRNNFSKMSAFFVVFFV--SAFFHEYLVSVPLKIFRLW 431


>Z75526-8|CAA99773.1|  496|Caenorhabditis elegans Hypothetical
           protein H19N07.4 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 625 FSDTWNFNFVAFDNIHVYRTVSTNYF*RITGF*GTFLVPEAKLDHIFSKDVPHKSYRRW 801
           F  +WN     F   H+Y  +  N F +++ F   F V  +   H +   VP K +R W
Sbjct: 375 FWKSWNIPVHRFAVRHIYSPMMRNNFSKMSAFFVVFFV--SAFFHEYLVSVPLKIFRLW 431


>AF221132-1|AAF82410.1|  498|Caenorhabditis elegans diacylglycerol
           acyltransferase protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 625 FSDTWNFNFVAFDNIHVYRTVSTNYF*RITGF*GTFLVPEAKLDHIFSKDVPHKSYRRW 801
           F  +WN     F   H+Y  +  N F +++ F   F V  +   H +   VP K +R W
Sbjct: 377 FWKSWNIPVHRFAVRHIYSPMMRNNFSKMSAFFVVFFV--SAFFHEYLVSVPLKIFRLW 433


>Z50795-3|CAA90664.1|  200|Caenorhabditis elegans Hypothetical
           protein R166.3 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 351 NKFCYSKTYHFSVFCPSLSVGGQLTSLQCSISIRINMYLLHN 476
           N++  +  +H S F P      ++ SLQC +S+ IN   +HN
Sbjct: 68  NEYAKTSAFHDSRFKPISRE--EVPSLQCGVSLLINFEPIHN 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,633
Number of Sequences: 27780
Number of extensions: 322343
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)