Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o13
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   0.51 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   1.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.2  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   2.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   2.7  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   3.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   3.6  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.2  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   6.2  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   6.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    24   8.2  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   8.2  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 32  RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 160
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 187 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 92
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -2

Query: 286 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 107
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 106 LSASIQASLPSSEIYRQL 53
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 397 KLRALLVVIPRILRSPPPTHPLIEDV 320
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 21  KESEETWRESTNWR*ISEEG 80
           KE  E W  + NW+  SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 262 LVTHKELALKVSSIIGTRVYVFDPSCY 182
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 47  IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 148
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 196 DPSCYFSTPPFDTVLYDNIRT 134
           DP+ Y    PFDTV  D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 402 ITSFAPY*SSFHAYSAPLLQLTPSLKTSS 316
           + SF PY S F A   P L ++PS   +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 122 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 39
           Q+ C+  LC YS  SP  R+LP    F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 340 HPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSS 224
           H ++ED V   N+ +   K  +  NN     EL  K+ S
Sbjct: 637 HSILEDEVERFNEYLTRLKKDVMQNNKPKENELINKIRS 675


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 139 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSD 26
           R +LKD     LS S+  SLPS     Q +   H  S+
Sbjct: 57  RKILKDVSLKRLSKSLDRSLPSENTIDQ-ISFNHAMSE 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,311
Number of Sequences: 5004
Number of extensions: 24308
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)