Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o13
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0302 - 2286171-2286341,2286747-2286968 28 3.5
05_01_0493 + 4113869-4116728,4116859-4117370 28 3.5
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 28 3.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 3.5
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 27 6.0
09_04_0220 - 15813809-15815380 27 6.0
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 6.0
11_02_0038 - 7631462-7634428,7635975-7636250 27 8.0
05_04_0049 + 17497255-17497908 27 8.0
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 27 8.0
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 7 YVRLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQ 114
+ RL+R RK + ++ G + +GEKLE + +E+
Sbjct: 55 WARLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 175 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 32
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
Length = 422
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 255 LIRNWPSRFLLL*APESTSSILPATFQLLPSIPYCTTTSGR 133
+ R P +FL+ P S S L + +LLPS P+ + G+
Sbjct: 275 IARQTPHKFLVKSPPSSLGSKLKSHGKLLPSRPFTVSPPGK 315
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 373 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 284
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/62 (20%), Positives = 30/62 (48%)
Frame = -2
Query: 403 NHKLRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSS 224
++ L+A L+ + ++ PP HPLI + + ++ + A +LV+ +S
Sbjct: 125 DYVLKASLLHLHHLIDPPPRHHPLITSTSSSAHHSLPPHAAAAAHVSLVSSSSTDANANS 184
Query: 223 II 218
++
Sbjct: 185 VV 186
>09_04_0220 - 15813809-15815380
Length = 523
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -2
Query: 247 ELALKVSSIIGTRVYVFDPSCYFSTPPFDTV----LYDNIRTVLKDNKTALLSASIQASL 80
EL V+ ++G F P CYF + + +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 79 P 77
P
Sbjct: 89 P 89
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 208 VYVFDPSCYFSTPPFDTVLYD-NIRTVLK-DNKTALLSASIQAS 83
V + D SC TP FDT + + N+ T K + A+L SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 187 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQ 89
CYF P + + +R + NKT +LS+ ++
Sbjct: 585 CYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVE 617
>05_04_0049 + 17497255-17497908
Length = 217
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 355 SPPPTHPLIEDVVMATNQAIIDYKVKIA 272
+PPP PL+E V+AT + ++ V +A
Sbjct: 114 APPPPSPLLEAPVLATEEHADNFVVVVA 141
>01_01_0930 +
7347680-7347886,7348030-7348082,7348175-7348247,
7348493-7348594,7348697-7348798,7348888-7348959,
7349067-7349129,7349210-7349251,7349620-7349679,
7349755-7349865,7350044-7350214,7350392-7350482,
7350571-7350845
Length = 473
Score = 26.6 bits (56), Expect = 8.0
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = -2
Query: 340 HPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFD 161
+P++EDV M + A+ DY VK + V ++ ++VS + + DP+ FD
Sbjct: 71 NPIVEDVRMRGDAAVKDYTVKF---DKVALDDVVVRVSDLPDVEL---DPAV---KEAFD 121
Query: 160 TVLYDNI 140
V YDNI
Sbjct: 122 -VAYDNI 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,009,323
Number of Sequences: 37544
Number of extensions: 168771
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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