Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o11
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   138   9e-34
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    33   0.028
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   3.2  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    26   5.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   5.6  
Z71266-9|CAD24483.1|  489|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AB040992-1|BAB21560.1|  489|Caenorhabditis elegans CeCRMP/DHP-1 ...    25   7.4  
Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z75532-3|CAA99810.1|  660|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AC006614-2|AAF39763.1|  254|Caenorhabditis elegans Drosophila od...    25   9.7  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  138 bits (333), Expect = 9e-34
 Identities = 58/84 (69%), Positives = 70/84 (83%)
 Frame = -3

Query: 253 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 74
           MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 73  KRTVAGGAWVFSTTAASSCRSAVR 2
            + VAGGA+V+ T  A++ RS +R
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIR 84


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 296 LFFSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 126
           L +S   C  + Y+  + +QK +N W+  H +RCL   N     +N T+    L LW
Sbjct: 403 LSYSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 157 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 74
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 112 KRSCVGIWSCKRCKRTVAGGAWVFSTT 32
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 112 KRSCVGIWSCKRCKRTVAGGAWVFSTT 32
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 190 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFST 35
           L+K  KKM V   A    S    + M  +C G    + C+R + G A +  T
Sbjct: 32  LKKSTKKMRVCPVAHCYSSLTAPEPMTSTCEG----ENCQRKIMGNAEILRT 79


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 130 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 11
           CGK  + R+C  +    +C        W F+TTAA++  S
Sbjct: 69  CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 211 GTRYGASLRKMVKKMEVTQHAK 146
           G RY + ++KMV K  VT H K
Sbjct: 46  GDRYVSKIKKMVGKFTVTLHIK 67


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 142  TCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 17
            TC  CG++  KR C+ +     C     G A   S  A+S C
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCAC----TGNATDTSVCASSVC 1156


>Z71266-9|CAD24483.1|  489|Caenorhabditis elegans Hypothetical
           protein R06C7.3 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 284 VNFCIGEVYQNGQTYQKGWNYWQIW 210
           ++FC  + ++NG++   G+N W+ W
Sbjct: 93  IDFCCPD-HRNGESLIAGYNRWRSW 116


>AB040992-1|BAB21560.1|  489|Caenorhabditis elegans CeCRMP/DHP-1
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 284 VNFCIGEVYQNGQTYQKGWNYWQIW 210
           ++FC  + ++NG++   G+N W+ W
Sbjct: 93  IDFCCPD-HRNGESLIAGYNRWRSW 116


>Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical
           protein T05D4.4 protein.
          Length = 651

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 58  LLQSSCIAYKTRCRHKNVS 114
           +++  C +YKT C+HK V+
Sbjct: 125 VIKKFCPSYKTACKHKAVT 143


>Z75532-3|CAA99810.1|  660|Caenorhabditis elegans Hypothetical
           protein C54G10.3 protein.
          Length = 660

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 136 SFCGKDAMKRSCVGIWSCKRCK 71
           S CGK ++ R   G+W C   K
Sbjct: 459 SGCGKSSLLRMFAGLWHCSSGK 480


>Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical
           protein C39B10.2a protein.
          Length = 460

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 271 SERFTKMAKRTKKVGITGKYG 209
           SE+F  MAK+ + V +TG+ G
Sbjct: 332 SEKFDSMAKKMQSVVLTGRRG 352


>AC006614-2|AAF39763.1|  254|Caenorhabditis elegans Drosophila
           odd-skipped-like protein2 protein.
          Length = 254

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -3

Query: 265 RFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 122
           R T  A R KK  I       +  S   ++ +   T    Y+C  CGK
Sbjct: 112 RTTGRAARPKKEFICKYCDRHFTKSYNLLIHERTHTDERPYSCDVCGK 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,650,445
Number of Sequences: 27780
Number of extensions: 159265
Number of successful extensions: 506
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)