Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o09
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.84 
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   7.8  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.8  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 822 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 649
           +CN+  + ++S  +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = -3

Query: 828 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 664
           + E  V      CM C +      A+T  +   CGH+ C          V+N +CP CK 
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239

Query: 663 GIRYKLKYKTL 631
            IR+ L  +T+
Sbjct: 240 RIRFALPDQTM 250


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 646  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 747
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -1

Query: 272 TCITLQQLVKMYSPEFGLCVNSKNMFVLTESVLTSISLKHSFGKC 138
           +C+++   ++ Y+P  GL  +S  M      +L++++ +   G+C
Sbjct: 247 SCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDEGQC 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,762
Number of Sequences: 5004
Number of extensions: 63617
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)