Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o09
         (854 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113263-1|AAM29268.1|  338|Drosophila melanogaster AT15655p pro...    40   0.006
AE014296-732|AAF47822.1|  338|Drosophila melanogaster CG1134-PA ...    40   0.006
BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p pro...    33   0.38 
AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA...    33   0.38 
BT029068-1|ABJ17001.1|  219|Drosophila melanogaster IP08077p pro...    32   1.2  
AE014297-4198|AAN14131.1|  219|Drosophila melanogaster CG31053-P...    32   1.2  
AY094874-1|AAM11227.1|  147|Drosophila melanogaster RE41137p pro...    31   2.0  
AY069072-1|AAL39217.1|  319|Drosophila melanogaster GH09066p pro...    31   2.0  
AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p pro...    31   2.0  
AE014135-64|AAN06527.1|  147|Drosophila melanogaster CG32850-PA ...    31   2.0  
AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-P...    31   2.0  
S62597-1|AAB27151.1|  753|Drosophila melanogaster neu protein.         31   2.7  
L12218-1|AAA28403.1|  754|Drosophila melanogaster zinc finger pr...    31   2.7  
BT003772-1|AAO41451.1|  672|Drosophila melanogaster RE20876p pro...    31   2.7  
AY051987-1|AAK93411.1|  753|Drosophila melanogaster LD45505p pro...    31   2.7  
AE014297-865|AAF54330.1|  754|Drosophila melanogaster CG11988-PA...    31   2.7  
AE014297-864|AAF54326.2|  753|Drosophila melanogaster CG11988-PB...    31   2.7  
AE014297-863|AAN13407.1|  672|Drosophila melanogaster CG11988-PC...    31   2.7  
AE014297-862|AAN13406.1|  671|Drosophila melanogaster CG11988-PD...    31   2.7  
AY113533-1|AAM29538.1|  274|Drosophila melanogaster RE60872p pro...    30   4.7  
AE014134-3269|AAF53913.1|  274|Drosophila melanogaster CG2617-PA...    30   4.7  

>AY113263-1|AAM29268.1|  338|Drosophila melanogaster AT15655p
           protein.
          Length = 338

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 753 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 658
           +  L CGH CLC DC + ++V  TCP C+  I
Sbjct: 300 IILLPCGHVCLCEDCAQKISV--TCPVCRGSI 329


>AE014296-732|AAF47822.1|  338|Drosophila melanogaster CG1134-PA
           protein.
          Length = 338

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 753 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 658
           +  L CGH CLC DC + ++V  TCP C+  I
Sbjct: 300 IILLPCGHVCLCEDCAQKISV--TCPVCRGSI 329


>BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p
           protein.
          Length = 771

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 744 LHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYKTL 631
           L C H CLC  C +++    N CP C++  R  L+ + +
Sbjct: 314 LPCRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAV 352


>AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA
           protein.
          Length = 789

 Score = 33.5 bits (73), Expect = 0.38
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 744 LHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYKTL 631
           L C H CLC  C +++    N CP C++  R  L+ + +
Sbjct: 332 LPCRHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAV 370


>BT029068-1|ABJ17001.1|  219|Drosophila melanogaster IP08077p
           protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 792 CMRCRRSFAVYPAVTY--LHCGHSCLCTDCDETVNVDNTCPKCKSGIR 655
           C +C R   V P + +    C H  LC  C    + D  CP CK  +R
Sbjct: 6   CNKCFRRRNVEPTLIFHMTQCQH-VLCASCLSESSTDKKCPLCKRDLR 52


>AE014297-4198|AAN14131.1|  219|Drosophila melanogaster CG31053-PA
           protein.
          Length = 219

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 792 CMRCRRSFAVYPAVTY--LHCGHSCLCTDCDETVNVDNTCPKCKSGIR 655
           C +C R   V P + +    C H  LC  C    + D  CP CK  +R
Sbjct: 6   CNKCFRRRNVEPTLIFHMTQCQH-VLCASCLSESSTDKKCPLCKRDLR 52


>AY094874-1|AAM11227.1|  147|Drosophila melanogaster RE41137p
           protein.
          Length = 147

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 792 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 670
           C+ C   F V  AV YL C H       D+ +    TCP C
Sbjct: 92  CVICMAEFCVNEAVRYLPCMHIYHVNCIDDWLLRSLTCPSC 132


>AY069072-1|AAL39217.1|  319|Drosophila melanogaster GH09066p
           protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 747 YLHCGHSCLCTDCDETVNVDNTCPKCKSGI 658
           +L CGH   CT C + +   N CP C+  I
Sbjct: 284 FLECGHMATCTSCGKVL---NECPICRQYI 310


>AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p
           protein.
          Length = 699

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 747 YLHCGHSCLCTDCDETVNVDNTCPKCKSGI 658
           +L CGH   CT C + +   N CP C+  I
Sbjct: 664 FLECGHMATCTSCGKVL---NECPICRQYI 690


>AE014135-64|AAN06527.1|  147|Drosophila melanogaster CG32850-PA
           protein.
          Length = 147

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 792 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 670
           C+ C   F V  AV YL C H       D+ +    TCP C
Sbjct: 92  CVICMAEFCVNEAVRYLPCMHIYHVNCIDDWLLRSLTCPSC 132


>AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-PA
           protein.
          Length = 700

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 747 YLHCGHSCLCTDCDETVNVDNTCPKCKSGI 658
           +L CGH   CT C + +   N CP C+  I
Sbjct: 665 FLECGHMATCTSCGKVL---NECPICRQYI 691


>S62597-1|AAB27151.1|  753|Drosophila melanogaster neu protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 710 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 745


>L12218-1|AAA28403.1|  754|Drosophila melanogaster zinc finger
           protein protein.
          Length = 754

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 711 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 746


>BT003772-1|AAO41451.1|  672|Drosophila melanogaster RE20876p
           protein.
          Length = 672

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 629 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 664


>AY051987-1|AAK93411.1|  753|Drosophila melanogaster LD45505p
           protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 710 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 745


>AE014297-865|AAF54330.1|  754|Drosophila melanogaster CG11988-PA,
           isoform A protein.
          Length = 754

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 711 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 746


>AE014297-864|AAF54326.2|  753|Drosophila melanogaster CG11988-PB,
           isoform B protein.
          Length = 753

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 710 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 745


>AE014297-863|AAN13407.1|  672|Drosophila melanogaster CG11988-PC,
           isoform C protein.
          Length = 672

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 629 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 664


>AE014297-862|AAN13406.1|  671|Drosophila melanogaster CG11988-PD,
           isoform D protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 756 AVTYLHCGHSCLCTDC--DETVNV-DNTCPKCKSGIR 655
           +V Y+ CGH C+C DC  ++   V    CP C++ IR
Sbjct: 628 SVLYM-CGHMCMCYDCAIEQWRGVGGGQCPLCRAVIR 663


>AY113533-1|AAM29538.1|  274|Drosophila melanogaster RE60872p
           protein.
          Length = 274

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 786 RCRRSFAVYPAVTYLHCGHSCLCTDC--DETVNVDNTCPKCKSGI 658
           RC    A    V  + C H CLC +C     + +++ CP C+  I
Sbjct: 222 RCVVCMAQSRNVVVMPCRHLCLCKECSLQLVLLLEDRCPVCRHNI 266


>AE014134-3269|AAF53913.1|  274|Drosophila melanogaster CG2617-PA
           protein.
          Length = 274

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 786 RCRRSFAVYPAVTYLHCGHSCLCTDC--DETVNVDNTCPKCKSGI 658
           RC    A    V  + C H CLC +C     + +++ CP C+  I
Sbjct: 222 RCVVCMAQSRNVVVMPCRHLCLCKECSLQLVLLLEDRCPVCRHNI 266


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,215,181
Number of Sequences: 53049
Number of extensions: 719708
Number of successful extensions: 2455
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)