Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o09
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 157 FKEIDVNTDSVNTNIFLLFTH-KPNSGLYILTSCCSVMQV 273
           FKE ++NT  +N N+F      + N  LY + +  +  Q+
Sbjct: 475 FKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQI 514


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 157 FKEIDVNTDSVNTNIFLLFTH-KPNSGLYILTSCCSVMQV 273
           FKE ++NT  +N N+F      + N  LY + +  +  Q+
Sbjct: 475 FKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQI 514


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 422 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 330
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 422 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 330
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 422 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 330
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 422 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 330
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 422 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 330
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 677 GHVLSTFTVSSQSVHKHECP 736
           GH +  FT   +  H+ +CP
Sbjct: 294 GHTVRCFTGGPRKSHESQCP 313


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 729 SCLCTDCDE 703
           SC C DCDE
Sbjct: 325 SCSCLDCDE 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,986
Number of Sequences: 438
Number of extensions: 4260
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)