Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o07
         (844 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022830-1|AAY55246.1|  669|Drosophila melanogaster IP13337p pro...    34   0.21 
AE014134-2446|AAF53366.2|  648|Drosophila melanogaster CG18146-P...    34   0.21 
AE014134-2445|AAO41187.1|  701|Drosophila melanogaster CG18146-P...    34   0.21 
BT015262-1|AAT94491.1| 1280|Drosophila melanogaster LD40317p pro...    33   0.65 
AE014297-467|AAF54121.2| 1280|Drosophila melanogaster CG9727-PA ...    33   0.65 
AE014296-2035|AAN12243.2|  870|Drosophila melanogaster CG32094-P...    33   0.65 
AE013599-1731|AAF58365.1|  950|Drosophila melanogaster CG6061-PA...    29   6.0  

>BT022830-1|AAY55246.1|  669|Drosophila melanogaster IP13337p
           protein.
          Length = 669

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +2

Query: 512 SCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDIN---SASIRCVCDDGYVSDYNADTETPY 682
           +C+ P        YED  VP  C P  R    N   S+   C CD G+V   +++  +  
Sbjct: 473 TCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCSSPGHCECDPGHVVTNSSEPNS-- 530

Query: 683 CRPRTVRDVMHDESFFPRAPCA 748
           CRP+     ++ E   P   CA
Sbjct: 531 CRPQCQEQCINAECVAPE-KCA 551


>AE014134-2446|AAF53366.2|  648|Drosophila melanogaster CG18146-PA,
           isoform A protein.
          Length = 648

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +2

Query: 512 SCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDIN---SASIRCVCDDGYVSDYNADTETPY 682
           +C+ P        YED  VP  C P  R    N   S+   C CD G+V   +++  +  
Sbjct: 452 TCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCSSPGHCECDPGHVVTNSSEPNS-- 509

Query: 683 CRPRTVRDVMHDESFFPRAPCA 748
           CRP+     ++ E   P   CA
Sbjct: 510 CRPQCQEQCINAECVAPE-KCA 530


>AE014134-2445|AAO41187.1|  701|Drosophila melanogaster CG18146-PB,
           isoform B protein.
          Length = 701

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +2

Query: 512 SCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDIN---SASIRCVCDDGYVSDYNADTETPY 682
           +C+ P        YED  VP  C P  R    N   S+   C CD G+V   +++  +  
Sbjct: 505 TCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCSSPGHCECDPGHVVTNSSEPNS-- 562

Query: 683 CRPRTVRDVMHDESFFPRAPCA 748
           CRP+     ++ E   P   CA
Sbjct: 563 CRPQCQEQCINAECVAPE-KCA 583


>BT015262-1|AAT94491.1| 1280|Drosophila melanogaster LD40317p protein.
          Length = 1280

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = -2

Query: 576  PTGTLQSSYMLSCVTSPGRKQLHKR----AKPVSVSANNHTPVLGLHDRARSRSKAKQ*A 409
            PT T  S+   +C  SPG  ++ +R    +K  S+  +N  P++G H + R    +    
Sbjct: 901  PTATGSSNPSQNCFASPGLTRMKQRPNLLSKQQSLDCDNRDPMIGAHRKGRGYVYSYP-- 958

Query: 408  SPARISFSCSWPSSPRILTIVSSSNNWQL 322
                 S S S P SP IL       NW L
Sbjct: 959  ----TSTSASAPPSPSILP-QWMCRNWSL 982


>AE014297-467|AAF54121.2| 1280|Drosophila melanogaster CG9727-PA
            protein.
          Length = 1280

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = -2

Query: 576  PTGTLQSSYMLSCVTSPGRKQLHKR----AKPVSVSANNHTPVLGLHDRARSRSKAKQ*A 409
            PT T  S+   +C  SPG  ++ +R    +K  S+  +N  P++G H + R    +    
Sbjct: 901  PTATGSSNPSQNCFASPGLTRMKQRPNLLSKQQSLDCDNRDPMIGAHRKGRGYVYSYP-- 958

Query: 408  SPARISFSCSWPSSPRILTIVSSSNNWQL 322
                 S S S P SP IL       NW L
Sbjct: 959  ----TSTSASAPPSPSILP-QWMCRNWSL 982


>AE014296-2035|AAN12243.2|  870|Drosophila melanogaster CG32094-PA
           protein.
          Length = 870

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 578 CAPHGR-IDDINSASIRCVCDDGYV-SDYNADTETPYCRPRTVRDVMHDESFFPRA-PCA 748
           C  HG  I   NSA   C+CD G+  +D N  + +P      VRDV   E   PR  PC 
Sbjct: 249 CGEHGTCIQAANSAGYVCICDQGWTWADANVTSASP---SACVRDVDECE---PRVNPCH 302

Query: 749 DGQVRL 766
           D  + L
Sbjct: 303 DECINL 308


>AE013599-1731|AAF58365.1|  950|Drosophila melanogaster CG6061-PA
           protein.
          Length = 950

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 245 NTHECHKTLTPCSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEK 391
           N  EC++   PCS+   C  CR  + +    D D++  + G +GQ+++K
Sbjct: 824 NYCECYEAKIPCSSICKCVGCR-NMEDRPDVDMDSLDGLMGVEGQKKDK 871


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,476,881
Number of Sequences: 53049
Number of extensions: 813711
Number of successful extensions: 2266
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2266
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)