Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o05
         (845 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros...    29   6.1  
AY071470-1|AAL49092.1|  534|Drosophila melanogaster RE54693p pro...    29   8.0  
AE014297-1460|AAF54758.1|  534|Drosophila melanogaster CG4830-PA...    29   8.0  

>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
            Drosophila melanogastercopia-like element 17.6. ).
          Length = 1058

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 21/80 (26%), Positives = 32/80 (40%)
 Frame = -2

Query: 505  TTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHS 326
            T Y+P  +    N I++  +   A T      +   T P       KF I+ Y+S  +H 
Sbjct: 776  TYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCREKFMIDIYSSEGKHY 835

Query: 325  FHQSKIYTNSATPDEDSQDD 266
                 IY+  AT +E    D
Sbjct: 836  VSCIDIYSKFATLEEIKTKD 855


>AY071470-1|AAL49092.1|  534|Drosophila melanogaster RE54693p
           protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 531 STVMVTSCVIPIEHVCSIVENITPTPGKTFVLT 629
           S   +T  +IP EH CS+++  T TP K   LT
Sbjct: 268 SKYSITYALIPPEHCCSLLDCPTATPEKLGSLT 300


>AE014297-1460|AAF54758.1|  534|Drosophila melanogaster CG4830-PA
           protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 531 STVMVTSCVIPIEHVCSIVENITPTPGKTFVLT 629
           S   +T  +IP EH CS+++  T TP K   LT
Sbjct: 268 SKYSITYALIPPEHCCSLLDCPTATPEKLGSLT 300


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,059,863
Number of Sequences: 53049
Number of extensions: 709841
Number of successful extensions: 1961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)