Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o05
(845 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 25 0.66
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.88
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 24 2.0
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 2.7
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 2.7
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 2.7
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 23 3.5
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 23 4.7
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 8.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 8.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 8.2
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 25.4 bits (53), Expect = 0.66
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -3
Query: 528 RDFMSAIQLHTGLKRNLILTTTSTKICCLKKQPPPVLYRLLTILPVLFYCN 376
R I + TGL R T + K P L ++ +L FY N
Sbjct: 193 RQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEETLIKISDVLEETFYNN 243
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 25.0 bits (52), Expect = 0.88
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = -2
Query: 175 KRCHQSNNVTVQYKNNDEFVTICNNLENN---RAYINLTN 65
K H +NN Y NN+ NN NN + Y N+ N
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.8 bits (49), Expect = 2.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 708 TKVFT*AFFGL*LATLMSHMPYTTSLYRPINISISHTFEFIV 833
T V T F GL T + +PY T+L + +S + F I+
Sbjct: 251 TTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATII 292
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 175 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 77
K H +NN Y NN+ + C L N YI
Sbjct: 88 KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 175 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 77
K H +NN Y NN+ + C L N YI
Sbjct: 88 KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 175 KRCHQSNNVTVQYKNNDEFVTICNNLENNRAYI 77
K H +NN Y NN+ + C L N YI
Sbjct: 88 KTIHNNNNYKYNY-NNNNYNNNCKKLYYNINYI 119
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 23.0 bits (47), Expect = 3.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 15 SFNKSNGFGISSLSSYSLVKLMYARLFSKLLQIVTNSSLFLYCTVT 152
S ++ NGF ++ S + V+L AR F + +N + + TVT
Sbjct: 243 SGDRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVT 288
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 416 YKTGGGCFFKQHILVDVVVKIKFLF 490
YK GGG F + L V+ I F
Sbjct: 12 YKNGGGAFLIPYFLTLVLAGIPMFF 36
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 652 NSGRTRSCLEKCTTIFGSLLKC 717
NSG T + CT G L KC
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 652 NSGRTRSCLEKCTTIFGSLLKC 717
NSG T + CT G L KC
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 652 NSGRTRSCLEKCTTIFGSLLKC 717
NSG T + CT G L KC
Sbjct: 378 NSGATDKIIRWCTWSEGDLEKC 399
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,096
Number of Sequences: 438
Number of extensions: 5006
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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