Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10o02
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   1.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   2.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   3.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   5.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    24   5.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    23   9.4  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    23   9.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    23   9.4  

>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 277 LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 116
           LF I++K N+          I   + K   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 220 ETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 89
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 174 WKNRSSLWTVCPLN*PILTLKSQKFNPY*PVTLLRILQTPKAYAENPSF*IRFRRSS 4
           WK + SLW + P    ++T    K +   P+        P+A   +P   + F RS+
Sbjct: 128 WKRKRSLWDIKPPGYELVTADQAKMSGVFPLP-----GAPRAAVTDPEKLLEFARSA 179


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 322 KLFVY*LKSYTVNYILFTIMSKPNVLTRILDAIAETNTKVD 200
           +LFVY  + +  +Y +       NVL R L  + +TN KV+
Sbjct: 727 ELFVYFTRDWITSYGV-DFDEILNVLLRFLKEVEDTNVKVE 766


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 241 RILDAIAETNTKVD-SVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQS 95
           RI + I  T   +  SVQ+ ++ +   FQPL  L  QL +    +  + S
Sbjct: 270 RIKNLITTTEDSLQQSVQSNIDFVNSGFQPLYDLTIQLKEELQSLKRLSS 319


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 151 DGLPAQLTDFNTKISEI 101
           DGLPA + +FN ++ ++
Sbjct: 410 DGLPALIENFNARVDKV 426


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -3

Query: 289 VNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQ 134
           VN+  F+     +++ ++ +A+   +     V   +      FQP++ LP+Q
Sbjct: 154 VNFTYFSENLARHIIIQVAEAVKHLHDVCGIVHRDIKPENLLFQPIEYLPSQ 205


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 181 NGLEESFQPLDGLPAQLTDFNTKISEIQSILTGDTA 74
           +  +   Q L+G  +++ D    +SE+ +   GDT+
Sbjct: 23  DNFDAEMQDLNGYISEIVDEARNVSEVDAKFLGDTS 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,498
Number of Sequences: 5004
Number of extensions: 19343
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)