Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10o01
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 355 3e-98
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 355 3e-98
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 355 3e-98
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 44 1e-04
AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical ... 43 3e-04
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 40 0.003
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 33 0.26
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 33 0.26
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 2.4
AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical ... 29 3.2
AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical ... 29 5.6
U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical pr... 28 7.4
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 28 7.4
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 28 7.4
AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical... 28 7.4
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 7.4
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 7.4
AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein. 28 7.4
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 28 9.7
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 28 9.7
U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical pr... 28 9.7
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 28 9.7
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 28 9.7
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 355 bits (872), Expect = 3e-98
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Frame = -2
Query: 826 PEFTTCEFYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPF 650
PEFTTCEFYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF
Sbjct: 254 PEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPF 313
Query: 649 ARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLLDKLVSVF 470
RV M L L LP P L T EA + + LC + ++CS PRTTARLLDKLV +
Sbjct: 314 KRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEY 373
Query: 469 LEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRER 290
LE I+PTF++ HPQIMSPL+K+HR +PGLTERFE++ +EI NAYTELNDP TQR+R
Sbjct: 374 LESTFISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQR 433
Query: 289 FEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 110
FE+QAK++ AGDDE DE FC ALEYGLPPTGGWG+G+DRL+M LTD+NNIKEVLLFP
Sbjct: 434 FEQQAKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 493
Query: 109 AMKPDDPNKNNTE 71
AM+P+D + T+
Sbjct: 494 AMRPEDGTEKKTD 506
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 355 bits (872), Expect = 3e-98
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Frame = -2
Query: 826 PEFTTCEFYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPF 650
PEFTTCEFYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF
Sbjct: 336 PEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPF 395
Query: 649 ARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLLDKLVSVF 470
RV M L L LP P L T EA + + LC + ++CS PRTTARLLDKLV +
Sbjct: 396 KRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEY 455
Query: 469 LEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRER 290
LE I+PTF++ HPQIMSPL+K+HR +PGLTERFE++ +EI NAYTELNDP TQR+R
Sbjct: 456 LESTFISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQR 515
Query: 289 FEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 110
FE+QAK++ AGDDE DE FC ALEYGLPPTGGWG+G+DRL+M LTD+NNIKEVLLFP
Sbjct: 516 FEQQAKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 575
Query: 109 AMKPDDPNKNNTE 71
AM+P+D + T+
Sbjct: 576 AMRPEDGTEKKTD 588
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 355 bits (872), Expect = 3e-98
Identities = 157/253 (62%), Positives = 194/253 (76%), Gaps = 1/253 (0%)
Frame = -2
Query: 826 PEFTTCEFYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEI-EIDFTPPF 650
PEFTTCEFYMAYADY D++ +TE +LS MV SI G+YK++YHP GP + + E+DFTPPF
Sbjct: 312 PEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPF 371
Query: 649 ARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLLDKLVSVF 470
RV M L L LP P L T EA + + LC + ++CS PRTTARLLDKLV +
Sbjct: 372 KRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEY 431
Query: 469 LEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRER 290
LE I+PTF++ HPQIMSPL+K+HR +PGLTERFE++ +EI NAYTELNDP TQR+R
Sbjct: 432 LESTFISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQR 491
Query: 289 FEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 110
FE+QAK++ AGDDE DE FC ALEYGLPPTGGWG+G+DRL+M LTD+NNIKEVLLFP
Sbjct: 492 FEQQAKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
Query: 109 AMKPDDPNKNNTE 71
AM+P+D + T+
Sbjct: 552 AMRPEDGTEKKTD 564
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = -2
Query: 211 EYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 110
+YG P GG+GLG++R +LTD+N+I++V L+P
Sbjct: 504 KYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYP 537
>AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical
protein Y32F6A.6 protein.
Length = 261
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = -2
Query: 826 PEFTTCEFYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDFTPPFA 647
P T E M + ND + E +++ +V SI S+ +KY + +EIDFTPPF
Sbjct: 165 PLVLTAEISMCNINLNDFQDLVEELITTLVYSIKRSFLIKY-------RSVEIDFTPPFK 217
Query: 646 RV 641
R+
Sbjct: 218 RL 219
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -2
Query: 241 PTDEA--FCTALEYGLPPTGGWGLGVDRLTMFLTDSNN----IKEVLLFPAMK 101
PTDE AL +G PP GG+ LG+DR LT N +++V+ FP K
Sbjct: 510 PTDEMEHLLNALSHGAPPHGGFALGLDRFVAMLTSDGNPLTPVRDVIAFPKTK 562
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -2
Query: 232 EAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP 110
+++ + +YG PP G G+G++R+TM +NI+ LFP
Sbjct: 483 QSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFP 523
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/119 (22%), Positives = 44/119 (36%)
Frame = -2
Query: 427 PQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDE 248
PQ+ +PL + H D+ + F N Y L P++ E F+ + DD+
Sbjct: 160 PQLTNPLMRPH-DMFSYSNYFSGIHDTSAATNIYQGL--PSSS-EPFDASVVVPTSSDDQ 215
Query: 247 TPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFPAMKPDDPNKNNTE 71
P + YG PP + + T + SNN+ + P D + E
Sbjct: 216 MTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTDPRQLE 274
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/119 (22%), Positives = 44/119 (36%)
Frame = -2
Query: 427 PQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDE 248
PQ+ +PL + H D+ + F N Y L P++ E F+ + DD+
Sbjct: 160 PQLTNPLMRPH-DMFSYSNYFSGIHDTSAATNIYQGL--PSSS-EPFDASVVVPTSSDDQ 215
Query: 247 TPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFPAMKPDDPNKNNTE 71
P + YG PP + + T + SNN+ + P D + E
Sbjct: 216 MTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPIAPPTSDMDTDPRQLE 274
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 205 GLPPTGGWGLGVDRLTMFL 149
G PPTGG+G+G +R+ +L
Sbjct: 379 GQPPTGGFGIGFERMLQYL 397
>AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical
protein Y111B2A.8 protein.
Length = 582
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 469 LEEECINPTFILDHPQIMSPLSKYHRDVP 383
L+ + N T+IL H +IM LS Y RD+P
Sbjct: 337 LDRKTGNITYILTHKRIMKFLSLYMRDLP 365
>AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical
protein W03F8.2 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 523 CSPPRTTARLLDKLVSVFLEEE--CINPTFILDHPQIMSPLSKYHRDV 386
C PPRT + D L++ + + C + TF L HP + H DV
Sbjct: 273 CEPPRTFESISD-LLNYYTKNHGGCASGTFQLKHPILQQSWEFMHSDV 319
>U41508-5|AAG00025.2| 511|Caenorhabditis elegans Hypothetical
protein W01C8.5a protein.
Length = 511
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -2
Query: 256 DDETPPTDEAF-CTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP--AMKPDDPN 86
D + PT E EYG+ P G + DR+ + + + + I E F + K D
Sbjct: 75 DTKDVPTREGIKAHTFEYGITPLGSFPEDNDRVVVHVPEKHRIDEFKSFSIYSFKTDKSM 134
Query: 85 KNNTEEENVGVQTSV 41
+ ENV + SV
Sbjct: 135 ASVVFPENVKIPKSV 149
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/75 (21%), Positives = 26/75 (34%)
Frame = -2
Query: 295 ERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLL 116
E F+ + DD+ P + YG PP + + T + SNN+ +
Sbjct: 162 EPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPI 221
Query: 115 FPAMKPDDPNKNNTE 71
P D + E
Sbjct: 222 APPTSDMDTDPRQLE 236
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/75 (21%), Positives = 26/75 (34%)
Frame = -2
Query: 295 ERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLL 116
E F+ + DD+ P + YG PP + + T + SNN+ +
Sbjct: 162 EPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFSTTSIASSNNLARYPI 221
Query: 115 FPAMKPDDPNKNNTE 71
P D + E
Sbjct: 222 APPTSDMDTDPRQLE 236
>AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical
protein Y111B2A.4 protein.
Length = 459
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 346 KEICNAYTELNDPATQRERFEEQ-AKNRAAGDDETPPTDEAFCTALEY 206
KE+ NAYTELN+ + E F+EQ + A +D D +EY
Sbjct: 300 KELANAYTELNE---EFEGFKEQHTATQNANNDLNRRIDSLKANLIEY 344
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 394 RDVPGLTER-FEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEA 227
RD+ + ++ E+ +KE A EL D Q+E+FE+ K A G T T+ A
Sbjct: 1000 RDLQTIRQQSIEIVEREKERDRARKELEDVTRQKEKFEKDKK--AVGGQLTSMTERA 1054
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 394 RDVPGLTER-FEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEA 227
RD+ + ++ E+ +KE A EL D Q+E+FE+ K A G T T+ A
Sbjct: 1000 RDLQTIRQQSIEIVEREKERDRARKELEDVTRQKEKFEKDKK--AVGGQLTSMTERA 1054
>AF326938-1|AAG49388.1| 511|Caenorhabditis elegans XG314 protein.
Length = 511
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -2
Query: 256 DDETPPTDEAF-CTALEYGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFP--AMKPDDPN 86
D + PT E EYG+ P G + DR+ + + + + I E F + K D
Sbjct: 75 DTKDVPTREGIKAHTFEYGITPLGSFPEDNDRVVVHVPEKHRIDEFKSFSIYSFKTDKSM 134
Query: 85 KNNTEEENVGVQTSV 41
+ ENV + SV
Sbjct: 135 ASVVFPENVKIPKSV 149
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -2
Query: 307 ATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIK 128
A F+E + A D E EA P GG+ G R F+ ++N +
Sbjct: 66 ADSTSNFDEHVGDDAELDYELEQAPEATEDGAVVNNPVCGGYHFGRKRADDFVPNANTV- 124
Query: 127 EVLLFP---AMKPDDPNKNNTEEE 65
VL +P A+ P +P ++++EE
Sbjct: 125 TVLKWPTNLAIPPRNPVLSDSDEE 148
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -2
Query: 307 ATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGWGLGVDRLTMFLTDSNNIK 128
A F+E + A D E EA P GG+ G R F+ ++N +
Sbjct: 64 ADSTSNFDEHVGDDAELDYELEQAPEATEDGAVVNNPVCGGYHFGRKRADDFVPNANTV- 122
Query: 127 EVLLFP---AMKPDDPNKNNTEEE 65
VL +P A+ P +P ++++EE
Sbjct: 123 TVLKWPTNLAIPPRNPVLSDSDEE 146
>U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical
protein F18E9.7 protein.
Length = 395
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 328 YTELNDPATQRERFEEQAKNRAAGDDETPPTDE 230
Y LN+P+T+RE E ++A +D+T D+
Sbjct: 181 YQPLNNPSTKREALEFLKHLKSASEDKTLTVDD 213
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = -2
Query: 346 KEICNA---YTELND---PATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG 185
K +CNA Y L+ P R+ F +Q R +DE P T +A + GLP
Sbjct: 283 KLVCNACGLYYRLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMAN 342
Query: 184 WGLGVDRLTMFLTDSNNIKE 125
G + LT FL N + +
Sbjct: 343 G--GANALT-FLEQINQLNQ 359
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = -2
Query: 346 KEICNA---YTELND---PATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG 185
K +CNA Y L+ P R+ F +Q R +DE P T +A + GLP
Sbjct: 283 KLVCNACGLYYRLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMAN 342
Query: 184 WGLGVDRLTMFLTDSNNIKE 125
G + LT FL N + +
Sbjct: 343 G--GANALT-FLEQINQLNQ 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,614,264
Number of Sequences: 27780
Number of extensions: 508965
Number of successful extensions: 1345
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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