Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n23
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    29   0.62 
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    29   1.1  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.8  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    26   5.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 601 PTV*LCCVCNVQYLYR*ILQTTARYCFRRFLYGLTQ*RNRAGVSNCAVWDSCAISILLTS 422
           PTV    + N  Y+    L     Y + +  Y + Q   + G+SN     SC  +   TS
Sbjct: 243 PTVPQAVIYNSPYIIT--LHNQYIYIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTS 297

Query: 421 NVYLWLVLAAD 389
           N Y+W++   D
Sbjct: 298 NSYVWILTPED 308


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 109 KKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNIS------LPATSE 270
           ++E K    I  + + L  G G PG  +    D E S  ++S   N+       LPA+ E
Sbjct: 598 ERETKEAEKIRELSVRLNGGNGFPGHVHNNREDDEVSIASTSSKSNVEMEDTRLLPASLE 657

Query: 271 LASTRSPS 294
           LA+T+  S
Sbjct: 658 LANTQGAS 665


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +1

Query: 160 ALGRGLPGFGNTAVPDGEASSTASSLSRN--ISLPATSELASTR-SPSVT*QKKLHP 321
           AL   LPG  NT +P+G +++T +S++ N   S  A+ ++ + + SPS++ +   +P
Sbjct: 89  ALSHALPG--NTNLPNGTSTNTMASMAANGGASSVASKQMGANQISPSLSSKTMKNP 143


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 749 HRSAHLDLHILNFEEKAACHRGPLV 823
           HR+ HL LH  N + +   HR P +
Sbjct: 485 HRAPHLALHFRNTDRRMNSHRYPFL 509


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 251 DMFLLRDEAVEDASPSGTAVLPNPGNP 171
           D  ++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 712 VVPTSTSKMGSKAPKCPPRPSH 777
           + P S   +  + P+ PPRPSH
Sbjct: 346 IAPASEMSLIPEKPRLPPRPSH 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,187
Number of Sequences: 5004
Number of extensions: 78365
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)