Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n23
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1059 - 10775143-10776063 38 0.010
08_01_0168 - 1385439-1385979,1386081-1387438 33 0.28
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 33 0.37
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 30 2.0
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004 29 3.5
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139... 29 3.5
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639... 29 3.5
08_01_0172 - 1460071-1460740,1460857-1461818 29 6.1
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144... 29 6.1
08_01_0163 - 1333280-1333391,1334954-1335418,1335591-1336951 29 6.1
10_06_0149 + 11264263-11264547,11264664-11264972 28 8.1
08_02_0988 + 23346696-23347523 28 8.1
>08_01_1059 - 10775143-10776063
Length = 306
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 52 NYTRTKHVSTRT--AHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 204
NY + K +++ H NA ++ + A+RG A A GRGL GFG+ VP
Sbjct: 110 NYCQRKFYTSQALGGHQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162
>08_01_0168 - 1385439-1385979,1386081-1387438
Length = 632
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 740 PIFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILRPY 597
PI E+E+GT FP+ L A + F + E+ G+ GFG + R Y
Sbjct: 329 PIVEIEMGTGPRRFPYYELVEATKSFAAE----EKLGQGGFGAVYRGY 372
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 601 GRKIRPNPHLPYCSKKNKRE------VKHRRAHLNLKNGK*STVVPTSTSKMG-SKAPKC 759
G ++ PHLP +K++KRE + RR GK VP + K+ KAP
Sbjct: 473 GMEVDSRPHLPPLAKRSKREKSSPPKIDTRRKAAGTGRGK--IKVPLAPKKLDLGKAPVA 530
Query: 760 PPRP 771
PP+P
Sbjct: 531 PPKP 534
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 737 IFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILRPY 597
I E+E+GT FP+ L A + F + E+ G+ GFG + R Y
Sbjct: 347 IVEIEMGTGPRRFPYYELVEATKSFAAE----EKLGQGGFGTVYRGY 389
>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
Length = 681
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 740 PIFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILRPY 597
PI E+E+G FP+ L A + F + E+ G+ GFG + R Y
Sbjct: 352 PIVEIEMGMGPRRFPYHELVDATKSFATE----EKLGQGGFGAVYRGY 395
>08_01_0169 -
1396657-1396710,1396801-1396843,1397440-1397904,
1397999-1399395
Length = 652
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 737 IFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILRPY 597
I E+E+GT FP+ +L A + F E+ G+ GFG + R Y
Sbjct: 343 IMEIEMGTGPRRFPYHKLVDATKSFAPE----EKLGQGGFGAVYRGY 385
>05_02_0078 -
6386278-6386291,6386462-6386594,6386721-6388613,
6391153-6391239,6391691-6391765,6393982-6394327,
6394428-6394450
Length = 856
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 678 PPQPQKWEVKHRRAHLNLKNGK 743
PP PQ ++V R+ H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206
>08_01_0172 - 1460071-1460740,1460857-1461818
Length = 543
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 740 PIFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILR 603
PI E+E+GT FP+ L A + F + E+ G+ GFG + R
Sbjct: 197 PIVEIEMGTGPRRFPYHILVNATKSFAAE----EKLGQGGFGAVYR 238
>08_01_0170 -
1440908-1441072,1441539-1441581,1442155-1442619,
1442714-1444149
Length = 702
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 740 PIFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILRPY 597
PI E+E+G FP+ L A + F E+ G+ GFG + R Y
Sbjct: 355 PIVEIEMGMGPRRFPYHELVDATKSFAPE----EKLGQGGFGAVYRGY 398
>08_01_0163 - 1333280-1333391,1334954-1335418,1335591-1336951
Length = 645
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 740 PIFEVEVGTTVLYFPFLRLRWARRCFTSRLFFFEQYGRCGFGRILR 603
PI E+E+GT FP+ L A + F + E+ G+ GFG + R
Sbjct: 330 PIVEIEMGTGPRRFPYHILVNATKSFAAE----EKLGQGGFGAVYR 371
>10_06_0149 + 11264263-11264547,11264664-11264972
Length = 197
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 806 DMQPFLRNLICEGRGGHFGALLPIFEVEVGTTVLYFPFLRLRWA 675
D P L++L C+GRG L E++V V Y L RWA
Sbjct: 101 DDAPSLQHLGCDGRGLAVLVCLTDDELKVQDKVYYDGLLESRWA 144
>08_02_0988 + 23346696-23347523
Length = 275
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 263 VAGRDMFLLR-DEAVEDASPSGTAVLPNPGNPRPRASA 153
+ G +++R D ++DASPS P P P PR A
Sbjct: 1 MGGNQEYMIRFDGHIDDASPSSATAEPPPPLPPPRPFA 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,265,225
Number of Sequences: 37544
Number of extensions: 547683
Number of successful extensions: 1825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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