Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n23
(840 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript varia... 33 1.3
DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript varia... 33 1.3
BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438... 33 1.3
BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript varia... 33 1.3
AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438... 33 1.3
AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438... 33 1.3
AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438... 33 1.3
AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens ... 33 1.3
AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein. 33 1.3
AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein pr... 33 1.3
U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar traffi... 31 5.2
U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome... 31 5.2
U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein. 31 5.2
U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein. 31 5.2
BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein. 31 5.2
BC033093-1|AAH33093.1| 958|Homo sapiens Treacher Collins-France... 31 6.9
BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for IM... 31 6.9
BC014559-1|AAH14559.1| 958|Homo sapiens Treacher Collins-France... 31 6.9
BC011764-1|AAH11764.1| 958|Homo sapiens Treacher Collins-France... 31 6.9
AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform p... 31 6.9
>DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 818
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 730
>DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript variant
2 protein.
Length = 818
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 730
>BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 740
>BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 828
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 740
>AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 740
>AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438
protein.
Length = 818
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 730
>AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438
protein.
Length = 392
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 304
>AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens
cDNA FLJ16387 fis, clone TRACH2007483, weakly similar
to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
Length = 779
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 691
>AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 304
>AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein
protein.
Length = 828
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 388 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTELV 504
H +RG+ + H EE SH CP+L+ HLH + E++
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEML 740
>U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar
trafficking phosphoprotein protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 115 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome
protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 115 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 115 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 115 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein.
Length = 1126
Score = 31.1 bits (67), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 115 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 198 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 236
>BC033093-1|AAH33093.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 109 KKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for
IMAGE:3921754) protein.
Length = 1414
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 109 KKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>BC014559-1|AAH14559.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 109 KKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>BC011764-1|AAH11764.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 109 KKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform
protein.
Length = 1488
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 109 KKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 231
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,516,792
Number of Sequences: 237096
Number of extensions: 2970082
Number of successful extensions: 7871
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7859
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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