Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n23
(840 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY052132-1|AAK93556.1| 920|Drosophila melanogaster SD08128p pro... 33 0.64
AE014296-3415|AAF51638.1| 920|Drosophila melanogaster CG11399-P... 33 0.64
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro... 31 1.5
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 31 1.5
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 31 1.5
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 31 1.5
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 31 1.5
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 31 1.5
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 31 1.5
U04246-1|AAA62472.1| 1284|Drosophila melanogaster putative potas... 31 2.6
AE013599-2592|AAF57772.2| 1284|Drosophila melanogaster CG5076-PA... 31 2.6
X71627-1|CAA50634.1| 643|Drosophila melanogaster tramtrack p69 ... 29 6.0
X17121-1|CAA34981.1| 641|Drosophila melanogaster protein ( Dros... 29 6.0
M62856-1|AAA28544.1| 641|Drosophila melanogaster fushi tarazu r... 29 6.0
BT001723-1|AAN71478.1| 643|Drosophila melanogaster RE69322p pro... 29 6.0
AY122169-1|AAM52681.1| 643|Drosophila melanogaster LD28689p pro... 29 6.0
AE014297-4786|AAN14283.1| 643|Drosophila melanogaster CG1856-PF... 29 6.0
AE014297-4785|AAF57181.1| 643|Drosophila melanogaster CG1856-PD... 29 6.0
AE014297-4784|AAF57182.3| 643|Drosophila melanogaster CG1856-PC... 29 6.0
AY089421-1|AAL90159.1| 379|Drosophila melanogaster AT24487p pro... 29 7.9
AE014296-1690|AAF50242.1| 379|Drosophila melanogaster CG3222-PA... 29 7.9
>AY052132-1|AAK93556.1| 920|Drosophila melanogaster SD08128p
protein.
Length = 920
Score = 32.7 bits (71), Expect = 0.64
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 172 GLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT 300
G PG G++ VP +SS+ASS +++ T+ ++ SPS T
Sbjct: 29 GTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPT 71
>AE014296-3415|AAF51638.1| 920|Drosophila melanogaster CG11399-PB
protein.
Length = 920
Score = 32.7 bits (71), Expect = 0.64
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 172 GLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT 300
G PG G++ VP +SS+ASS +++ T+ ++ SPS T
Sbjct: 29 GTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPT 71
>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
protein.
Length = 1153
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 689 SKMGSKAPSCPPQPQKWEVKHRSAHL 766
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>U04246-1|AAA62472.1| 1284|Drosophila melanogaster putative
potassium channel subunit protein.
Length = 1284
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 157 LALGRGLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT*QKKLH 318
L LG GLPG G A DG+ T + N+ +PA + RS +V Q H
Sbjct: 170 LGLG-GLPGLGGPAASDGD---TEAGEGNNLDVPAGCNMGRRRSRAVLYQLSGH 219
>AE013599-2592|AAF57772.2| 1284|Drosophila melanogaster CG5076-PA
protein.
Length = 1284
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 157 LALGRGLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT*QKKLH 318
L LG GLPG G A DG+ T + N+ +PA + RS +V Q H
Sbjct: 170 LGLG-GLPGLGGPAASDGD---TEAGEGNNLDVPAGCNMGRRRSRAVLYQLSGH 219
>X71627-1|CAA50634.1| 643|Drosophila melanogaster tramtrack p69
protein.
Length = 643
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 554 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 608
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 609 SNALSTSSSSST 620
>X17121-1|CAA34981.1| 641|Drosophila melanogaster protein (
Drosophila melanogastertramtrack (ttk) gene for a zinc
finger protein interactivewith the ftz transcriptional
regulatory region. ).
Length = 641
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 552 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 606
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 607 SNALSTSSSSST 618
>M62856-1|AAA28544.1| 641|Drosophila melanogaster fushi tarazu
repressor protein.
Length = 641
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 552 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 606
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 607 SNALSTSSSSST 618
>BT001723-1|AAN71478.1| 643|Drosophila melanogaster RE69322p
protein.
Length = 643
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 554 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 608
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 609 SNALSTSSSSST 620
>AY122169-1|AAM52681.1| 643|Drosophila melanogaster LD28689p
protein.
Length = 643
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 554 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 608
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 609 SNALSTSSSSST 620
>AE014297-4786|AAN14283.1| 643|Drosophila melanogaster CG1856-PF,
isoform F protein.
Length = 643
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 554 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 608
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 609 SNALSTSSSSST 620
>AE014297-4785|AAF57181.1| 643|Drosophila melanogaster CG1856-PD,
isoform D protein.
Length = 643
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 554 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 608
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 609 SNALSTSSSSST 620
>AE014297-4784|AAF57182.3| 643|Drosophila melanogaster CG1856-PC,
isoform C protein.
Length = 643
Score = 29.5 bits (63), Expect = 6.0
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 TAHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNISLPAT 264
TAH HK E + + A G+ L G + P + S S N SLPAT
Sbjct: 554 TAHVKIIHKIE-NPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQNS----NQSLPAT 608
Query: 265 SELASTRSPSVT 300
S ST S S T
Sbjct: 609 SNALSTSSSSST 620
>AY089421-1|AAL90159.1| 379|Drosophila melanogaster AT24487p
protein.
Length = 379
Score = 29.1 bits (62), Expect = 7.9
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = +1
Query: 430 EEWISHNCPKLRNLRHLH--DSFTELVRTRNV*NSSALL--SAIFT---DTDTEHYRHNT 588
++WI NC K R R + F + N+ A L +AI+ D E Y H
Sbjct: 180 KDWIKKNCRKARTSRIIEPPSDFCRRIIANNLATERAQLRSTAIYAPNGQVDRERYFHKL 239
Query: 589 AKQ*GRKIRPNPHLP 633
K+ G+ P ++P
Sbjct: 240 TKKRGQPNEPLENIP 254
>AE014296-1690|AAF50242.1| 379|Drosophila melanogaster CG3222-PA
protein.
Length = 379
Score = 29.1 bits (62), Expect = 7.9
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = +1
Query: 430 EEWISHNCPKLRNLRHLH--DSFTELVRTRNV*NSSALL--SAIFT---DTDTEHYRHNT 588
++WI NC K R R + F + N+ A L +AI+ D E Y H
Sbjct: 180 KDWIKKNCRKARTSRIIEPPSDFCRRIIANNLATERAQLRSTAIYAPNGQVDRERYFHKL 239
Query: 589 AKQ*GRKIRPNPHLP 633
K+ G+ P ++P
Sbjct: 240 TKKRGQPNEPLENIP 254
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,269,701
Number of Sequences: 53049
Number of extensions: 914892
Number of successful extensions: 3184
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3180
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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