Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n23
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-8|AAF98599.1|  534|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical ...    29   3.1  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AF101305-8|AAF98599.1|  534|Caenorhabditis elegans Hypothetical
           protein C04F5.9 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +2

Query: 248 YLFQLRQSLHQQGHPL*RNKKNYTQTSML*NFLKFR 355
           +L+Q  Q++HQ+  P+ RN+   T TS+L  + KF+
Sbjct: 414 FLYQHEQTVHQREPPVHRNQLTITATSLL-PYFKFQ 448


>AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical
           protein F54D12.5 protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 685 NLKNGK*STVVPTSTSKMGSKAPKCPPRPSHIKFRRKGCMSPGST 819
           ++ +G  S+   ++T+   SK P+C P P   +  ++  M PG++
Sbjct: 79  DISSGSGSSTAASATATTSSKLPRCTPPPVSNRQLKRYAMVPGTS 123


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 273  CINKVTLCNVTKKITPRPQCSKTF*NLESLLQTQACTLTSAART 404
            C+ K  +CN+++KIT   Q SK   N +S   T+  T+  + +T
Sbjct: 1453 CLQKRMICNMSRKITNMSQSSKY--NHDSQYVTETRTVMISPKT 1494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,615,731
Number of Sequences: 27780
Number of extensions: 466533
Number of successful extensions: 1594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)