Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n23
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 763 PRPSHIKFRRKGCMSPGSTR 822
           PRP H + RR+    PG+ R
Sbjct: 109 PRPPHPRLRREPEAEPGNNR 128



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 763 PRPSHIKFRRKGCMSPGSTR 822
           PRP H + RR+    PG+ R
Sbjct: 135 PRPPHPRLRREPEAEPGNNR 154


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 701  SKAPSCPPQPQKWEVKHRSAHLDLHILNFEEKAACHRGPLV 823
            S +P  PP P +   ++ S+  D    N   +A C R  LV
Sbjct: 1854 SGSPEPPPPPPRNHDQNNSSFNDSKESNEISEAECDRDQLV 1894


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 200 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 96
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 444 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 480


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 200 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 96
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 430 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 466


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 200 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 96
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 464 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 500


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 200 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 96
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 413 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,132
Number of Sequences: 438
Number of extensions: 5572
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)