Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n20
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ... 55 1e-08
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 29 0.77
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 29 0.77
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 29 0.77
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 29 1.0
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 29 1.0
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.8
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.4
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 2.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 5.5
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 5.5
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 26 7.2
>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
Apc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 54.8 bits (126), Expect = 1e-08
Identities = 20/55 (36%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = -1
Query: 775 IEVIELIEPSGWEMIPIKDI-HDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 614
+ +++ EP+GW +P+ D + + ++IQI +L+NHQ+G+D+H+R IK+++P
Sbjct: 109 VTTVQVEEPTGWVHVPVGDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAP 163
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 308 VSIY*CTLLLQLLSIIFIAVSFKVT*ILV*RFCIILLSIKMKMLNEIVNLAI 153
++IY C L+L LLS+IF A F V + V I +L + M+ ++ + I
Sbjct: 148 IAIYVCLLVLMLLSLIFFA-EFAVLALRVTGVIIAVLGAVLGMIIAVLGMII 198
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 308 VSIY*CTLLLQLLSIIFIAVSFKVT*ILV*RFCIILLSIKMKMLNEIVNLAI 153
++IY C L+L LLS+IF A F V + V I +L + M+ ++ + I
Sbjct: 148 IAIYVCLLVLMLLSLIFFA-EFAVLALRVTGVIIAVLGAVLGMIIAVLGMII 198
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 308 VSIY*CTLLLQLLSIIFIAVSFKVT*ILV*RFCIILLSIKMKMLNEIVNLAI 153
++IY C L+L LLS+IF A F V + V I +L + M+ ++ + I
Sbjct: 148 IAIYVCLLVLMLLSLIFFA-EFAVLALRVTGVIIAVLGAVLGMIIAVLGMII 198
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -3
Query: 308 VSIY*CTLLLQLLSIIFIAVSFKVT*ILV*RFCIILLSIKMKMLNEIV 165
++IY C L+L LLS+IF A F V + V I +L + + +L I+
Sbjct: 148 IAIYVCLLVLMLLSLIFFA-EFAVLALRVTGVIIAVLGMIIAVLGMII 194
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -3
Query: 308 VSIY*CTLLLQLLSIIFIAVSFKVT*ILV*RFCIILLSIKMKMLNEIV 165
++IY C L+L LLS+IF A F V + V I +L + + +L I+
Sbjct: 148 IAIYVCLLVLMLLSLIFFA-EFAVLALRVTGVIIAVLGMIIAVLGMII 194
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 172 SFNIFIFILSKMMQNL*TKIHVTLKETAIKIILSNCSS--KVHQ*METSLLAAYWSSCRA 345
S+ + S M+ N+ + + +KE+ I ++L +C K +E + A W
Sbjct: 1219 SYRLLGISCSDMVSNILSNECLPIKESFI-VLLGSCIKQLKTENFLEYKVTFAKWVEILL 1277
Query: 346 SYNFAYSPYNS 378
SY+ Y P++S
Sbjct: 1278 SYSNEYQPFSS 1288
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 424 FVIYLFSYEQLLFRNNCCKENKQNYMKLDSLTNKQ 320
FV++LF++E+ F + KQ + D LT K+
Sbjct: 227 FVLFLFTFEETTFDRAAAIDRKQIQISNDQLTVKE 261
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -1
Query: 646 THMRQIKVHSPCEPTSFD--INKFRNFSTVQFQQYATIR*YNLLLPIER 506
T + + V P EP S + +N F FST + +A + Y+LLL E+
Sbjct: 424 TPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQ 472
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 197 SIKMKMLNEIVNLAIFDPLFHKKLRKLLQ*YIRHK*KPMCMALDDFFFEN 48
S +K L I L IF K L ++ KP+ +L DF EN
Sbjct: 1124 SANIKQLFRIYRLEIFWSFVSKDLSNTTNDFLEFPYKPIYFSLSDFLKEN 1173
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 784 YKEIEVIELIEPSGWEMIPIKDIHD 710
++EI+ E+ E S WEMI +D D
Sbjct: 694 FEEIDTDEIEEQSDWEMISNQDASD 718
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 247 ETAIKIILSNCSSKVHQ*METSL 315
E+AIKI+ + C +H+ +ET+L
Sbjct: 569 ESAIKILANFCEPTIHEHLETAL 591
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 703 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 584
I T +I AVLS+H + + KV C+P S + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,647
Number of Sequences: 5004
Number of extensions: 60143
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -