Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n17
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    38   0.001
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    31   0.21 
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    27   2.6  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   2.6  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   2.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   6.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   6.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.0  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   8.0  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 8/243 (3%)
 Frame = -3

Query: 860 EKMKIAWRYEGLSQVESSFGS--NTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLS 687
           E+MKIAWRYE +S+ ++         + H+FDLS+    + I KS ++Y  + +      
Sbjct: 124 ERMKIAWRYEQVSKTKAPTLDMIPPGYTHSFDLSK----NLIVKSDMKYAVSPF------ 173

Query: 686 WQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEFQNY 507
               +  G    A   + L     T+  + GT + RL + S+ SP + ++ +  T  Q++
Sbjct: 174 ---PLETGSNPYAPVIESLTRFLSTL--TPGT-VCRLVLPSILSPAFYSIRA--THPQHF 225

Query: 506 GRDLIMFMYYLRILIR---DKNVAVFITIPSHLYEDPIIMKKVLYSAHNAV-RIESFAGS 339
               I F++ L  LI+     ++    ++PS L+         L +  +AV  +  F   
Sbjct: 226 ----IRFIHTLSSLIKCTTSVHLICMCSVPSTLFSRDCEQIFWLENLASAVFSLHPFPVK 281

Query: 338 EKETNPVYKDYHGLFHITKL-TAL-YTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEE 165
           E   N +     GLF I KL  AL +T       + DL+F + +++F IE   +PP  +E
Sbjct: 282 E-TVNGLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDE 340

Query: 164 TSE 156
             +
Sbjct: 341 QKD 343


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 737 KSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHS 564
           KS +    T   +S LSWQ  ++R  +K  ++HK  +N   ++L  S  N  R  +H+
Sbjct: 9   KSLLIQWLTVESNSLLSWQLHVKRKSIKFDIYHK--KNDTSSLLDGSNKNTDRSILHT 64


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = -3

Query: 284 KLTALYTLVP-FV----PPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDITATPS 123
           K+ A Y LVP FV     P L +  + + K F  + L+ PP+ ++  +++Q    ATPS
Sbjct: 114 KVFAFYLLVPIFVVYKAAPLLKMLLQ-QLKNFKNQALNQPPQQQQQQQQQQHQQHATPS 171


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -3

Query: 716 TTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNM 585
           T  WQD    WQ  + R  L++     + +  + + +R+  T++
Sbjct: 591 TNDWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHL 634


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 331 KQTLSTKITTDCFTLQN*RRCIH 263
           +Q L TKI T CF L N ++ +H
Sbjct: 401 RQALLTKIATKCFQLLNKQKSVH 423


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 717 YYNLARQYFKLANNYAQREIKKCFVSQIA-----KKYLRNCIKK*RYKHAQTCYTLIGFP 553
           YYN  +Q F+ AN+++   I     SQ       KK LR CI K  YK  +    L    
Sbjct: 677 YYN-GKQSFE-ANSHSSSSIALADPSQFESNKQRKKLLRTCINKFNYKPTRGLKMLSENE 734

Query: 552 YMD 544
           Y+D
Sbjct: 735 YVD 737


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = +2

Query: 596 RYFLIQFRKYFLAICETKHFLISLCA*LFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQ 775
           RY +IQ  + FL+   T HF     A    SL Y    +      Y  L  Q Q   SS 
Sbjct: 405 RYLIIQLIRVFLSGLSTVHFQDFFFADQMVSLTYACGNISLFFCLYKRLWRQPQLCNSSH 464

Query: 776 S 778
           S
Sbjct: 465 S 465


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = -3

Query: 464 IRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESF 348
           IR+K + + + +  HLY D ++ + +L +  + ++  +F
Sbjct: 292 IREKALLLALDLSKHLYHDKLVARTILANFRSDIKGTAF 330


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 122 SMALQLYRPALSHSSLQVLVECVI 193
           S+  QLY P  +H  +  L+EC +
Sbjct: 247 SLCYQLYYPRTAHVRIHYLIECAL 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,978
Number of Sequences: 5004
Number of extensions: 80927
Number of successful extensions: 255
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)