Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n17
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 32 0.52
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 31 1.6
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 30 2.1
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 30 2.8
06_01_0059 - 510856-511499,511595-511805 29 3.6
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 3.6
03_05_0065 + 20450814-20452748 29 4.8
04_02_0016 + 8557023-8557176,8557277-8557908 29 6.4
01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094 29 6.4
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 8.4
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 28 8.4
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 536 DSDDTEFQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLY 381
+S D E NY RD+ +F+Y+L I+ VA + H + K +LY
Sbjct: 111 ESIDVESNNYSRDMFLFLYFLLII-----VAAMTSFKVHQDKSSFTGKSILY 157
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 688 LKVLSCQVVVPY-WILLFSIVSASMYLL-KSKLCPKLVLLPNDDSTW 822
L LS V+ P WI S+ S S+ +L KS L P VL+P D S W
Sbjct: 1347 LSYLSSLVMAPIVWIFYISLTSLSLSILGKSFLQPNYVLIP-DVSIW 1392
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 720 WY-YNLARQYFKLANNYAQREIKKCFVSQIAKKYLRNCIKK*RYKHAQTCYTLIGFPYM 547
WY Y FK+AN+ EI CF S+ K +L C+K+ + +L+G P++
Sbjct: 495 WYPYEDVAAIFKIANSKDIPEIPDCF-SKEGKDFLSLCLKRDPVQRPSAA-SLLGHPFV 551
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 455 KNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS-EKETNPVYKDYHGLFHITKL 279
K VA+ + L +DP + +L + A R+ FAG + ET +++ L H+
Sbjct: 737 KRVAMELQYMGPLNKDPALEYMLLQAVRFAFRMHQFAGGFDPETMDAFEELRNLVHVRNS 796
Query: 278 T 276
T
Sbjct: 797 T 797
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 748 SASMYLLKSKLCPKLVLLPNDDSTWLKP 831
S S+ + + LCP LPNDD W P
Sbjct: 121 SPSVVITGTNLCPPNWYLPNDDGGWCNP 148
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = -3
Query: 827 LSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSA 648
L + E S+ S N H+ ++ + AD + +++D +SW +RR ++ +
Sbjct: 450 LCEKEISYSSAVNLPHSLEMLLELVADKNRSVVLAVAGASYRDMLMSWVCRLRRLRVTNF 509
Query: 647 LFHKLLRNIYE 615
+ L + YE
Sbjct: 510 VVCALDQETYE 520
>03_05_0065 + 20450814-20452748
Length = 644
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 254 MVRVYTAPLIL*CETVRGNLCRQGLF 331
MVRV AP I+ T+ G LCR GLF
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLF 267
>04_02_0016 + 8557023-8557176,8557277-8557908
Length = 261
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 736 FSIVSASMYLLKSKLCPKLVLLPNDDSTWLKP 831
F I S+ + + LCP LPND W P
Sbjct: 99 FCISGTSVTITATNLCPPNYALPNDAGGWCNP 130
>01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094
Length = 251
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 754 SMYLLKSKLCPKLVLLPNDDSTWLKP 831
S+ + + LCP LPNDD W P
Sbjct: 97 SVTVTATNLCPPNYALPNDDGGWCNP 122
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 717 YYNLARQYFKLANNYAQREIKKCFVSQ 637
YY L Q F + N Q +KCFV Q
Sbjct: 665 YYGLLGQRFCMINKVYQENFEKCFVQQ 691
>04_04_0348 +
24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 629 LAICETKHFLISLCA*LFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQSYV 784
L C T H + C F LK L ++ GF++ +L +CIC S S V
Sbjct: 73 LGECSTCHGSFAECPGHFGYLKLALPV--FNVGFFNCILDVLKCICKSCSRV 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,644,050
Number of Sequences: 37544
Number of extensions: 460963
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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