Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n17
         (868 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83307-6|CAM13056.1|  424|Homo sapiens elongation protein 4 homo...   152   1e-36
AK000505-1|BAA91212.1|  424|Homo sapiens protein ( Homo sapiens ...   152   1e-36
Z83307-7|CAM13057.1|  531|Homo sapiens elongation protein 4 homo...   134   5e-31
Z83001-1|CAM28371.1|  531|Homo sapiens elongation protein 4 homo...   134   5e-31
BC012514-1|AAH12514.1|  535|Homo sapiens ELP4 protein protein.        134   5e-31

>Z83307-6|CAM13056.1|  424|Homo sapiens elongation protein 4 homolog
           (S. cerevisiae) protein.
          Length = 424

 Score =  152 bits (369), Expect = 1e-36
 Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 7/242 (2%)
 Frame = -3

Query: 857 KMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ 681
           KMKIAWRY+ L ++E    S++ FGH +D S+ +  + IE S    +       STL  +
Sbjct: 157 KMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVE 216

Query: 680 T-TMRRGKLKSALFHKLLRNIYETVLRSSGT-----NMLRLAIHSLGSPIWMAMDSDDTE 519
             ++  G  K   F + +  IYE     S       N+LR+ I +LGSP+W   D    E
Sbjct: 217 PCSLTPGYTKLLQFIQNI--IYEEGFDGSNPQKKQRNILRIGIQNLGSPLW-GDDICCAE 273

Query: 518 FQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS 339
                  L  F+Y LR L+R    A  IT+P+HL ++  I+ +V   +   V +ESF GS
Sbjct: 274 NGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGS 333

Query: 338 EKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETS 159
           E+ETNP+YKDYHGL HI ++  L  L+       DLAFKLKRK F IE+LH+PP+L +T 
Sbjct: 334 ERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTV 393

Query: 158 ER 153
            R
Sbjct: 394 SR 395


>AK000505-1|BAA91212.1|  424|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20498 fis, clone KAT08960. ).
          Length = 424

 Score =  152 bits (369), Expect = 1e-36
 Identities = 96/242 (39%), Positives = 134/242 (55%), Gaps = 7/242 (2%)
 Frame = -3

Query: 857 KMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ 681
           KMKIAWRY+ L ++E    S++ FGH +D S+ +  + IE S    +       STL  +
Sbjct: 157 KMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVE 216

Query: 680 T-TMRRGKLKSALFHKLLRNIYETVLRSSGT-----NMLRLAIHSLGSPIWMAMDSDDTE 519
             ++  G  K   F + +  IYE     S       N+LR+ I +LGSP+W   D    E
Sbjct: 217 PCSLTPGYTKLLQFIQNI--IYEEGFDGSNPQKKQRNILRIGIQNLGSPLW-GDDICCAE 273

Query: 518 FQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS 339
                  L  F+Y LR L+R    A  IT+P+HL ++  I+ +V   +   V +ESF GS
Sbjct: 274 NGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGS 333

Query: 338 EKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETS 159
           E+ETNP+YKDYHGL HI ++  L  L+       DLAFKLKRK F IE+LH+PP+L +T 
Sbjct: 334 ERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTV 393

Query: 158 ER 153
            R
Sbjct: 394 SR 395


>Z83307-7|CAM13057.1|  531|Homo sapiens elongation protein 4 homolog
           (S. cerevisiae) protein.
          Length = 531

 Score =  134 bits (323), Expect = 5e-31
 Identities = 89/228 (39%), Positives = 123/228 (53%), Gaps = 7/228 (3%)
 Frame = -3

Query: 857 KMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ 681
           KMKIAWRY+ L ++E    S++ FGH +D S+ +  + IE S    +       STL  +
Sbjct: 157 KMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVE 216

Query: 680 T-TMRRGKLKSALFHKLLRNIYETVLRSSGT-----NMLRLAIHSLGSPIWMAMDSDDTE 519
             ++  G  K   F + +  IYE     S       N+LR+ I +LGSP+W   D    E
Sbjct: 217 PCSLTPGYTKLLQFIQNI--IYEEGFDGSNPQKKQRNILRIGIQNLGSPLW-GDDICCAE 273

Query: 518 FQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS 339
                  L  F+Y LR L+R    A  IT+P+HL ++  I+ +V   +   V +ESF GS
Sbjct: 274 NGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGS 333

Query: 338 EKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIE 195
           E+ETNP+YKDYHGL HI ++  L  L+       DLAFKLKRK F IE
Sbjct: 334 ERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIE 381


>Z83001-1|CAM28371.1|  531|Homo sapiens elongation protein 4 homolog
           (S. cerevisiae) protein.
          Length = 531

 Score =  134 bits (323), Expect = 5e-31
 Identities = 89/228 (39%), Positives = 123/228 (53%), Gaps = 7/228 (3%)
 Frame = -3

Query: 857 KMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ 681
           KMKIAWRY+ L ++E    S++ FGH +D S+ +  + IE S    +       STL  +
Sbjct: 157 KMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVE 216

Query: 680 T-TMRRGKLKSALFHKLLRNIYETVLRSSGT-----NMLRLAIHSLGSPIWMAMDSDDTE 519
             ++  G  K   F + +  IYE     S       N+LR+ I +LGSP+W   D    E
Sbjct: 217 PCSLTPGYTKLLQFIQNI--IYEEGFDGSNPQKKQRNILRIGIQNLGSPLW-GDDICCAE 273

Query: 518 FQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS 339
                  L  F+Y LR L+R    A  IT+P+HL ++  I+ +V   +   V +ESF GS
Sbjct: 274 NGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGS 333

Query: 338 EKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIE 195
           E+ETNP+YKDYHGL HI ++  L  L+       DLAFKLKRK F IE
Sbjct: 334 ERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIE 381


>BC012514-1|AAH12514.1|  535|Homo sapiens ELP4 protein protein.
          Length = 535

 Score =  134 bits (323), Expect = 5e-31
 Identities = 89/228 (39%), Positives = 123/228 (53%), Gaps = 7/228 (3%)
 Frame = -3

Query: 857 KMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ 681
           KMKIAWRY+ L ++E    S++ FGH +D S+ +  + IE S    +       STL  +
Sbjct: 157 KMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVE 216

Query: 680 T-TMRRGKLKSALFHKLLRNIYETVLRSSGT-----NMLRLAIHSLGSPIWMAMDSDDTE 519
             ++  G  K   F + +  IYE     S       N+LR+ I +LGSP+W   D    E
Sbjct: 217 PCSLTPGYTKLLQFIQNI--IYEEGFDGSNPQKKQRNILRIGIQNLGSPLW-GDDICCAE 273

Query: 518 FQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNAVRIESFAGS 339
                  L  F+Y LR L+R    A  IT+P+HL ++  I+ +V   +   V +ESF GS
Sbjct: 274 NGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGS 333

Query: 338 EKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIE 195
           E+ETNP+YKDYHGL HI ++  L  L+       DLAFKLKRK F IE
Sbjct: 334 ERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIE 381


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,223,875
Number of Sequences: 237096
Number of extensions: 2636983
Number of successful extensions: 12392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12381
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)