Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n17
         (868 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075211-1|AAL68078.1|  437|Drosophila melanogaster AT14778p pro...   136   3e-32
AE014134-925|AAF52255.1|  437|Drosophila melanogaster CG6907-PA ...   136   3e-32

>AY075211-1|AAL68078.1|  437|Drosophila melanogaster AT14778p
           protein.
          Length = 437

 Score =  136 bits (330), Expect = 3e-32
 Identities = 77/199 (38%), Positives = 118/199 (59%), Gaps = 3/199 (1%)
 Frame = -3

Query: 704 QDSTLS-WQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSD 528
           QDS L  +     +G L      +LLRN  E+ +  +  N+ R+ + SLGSP+W      
Sbjct: 243 QDSPLQVFHNPRYKGLLND--IQQLLRN--ESFVAGTKNNLCRVCLTSLGSPLWYD---- 294

Query: 527 DTEFQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYE--DPIIMKKVLYSAHNAVRIE 354
               +++G DLI F+  L   +R+ N    IT+P HL    D  ++ K+      A+ +E
Sbjct: 295 ----EHFGEDLIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE 350

Query: 353 SFAGSEKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPE 174
           SFAGSE+ET+P +K+Y GL H+ K++A+ TL   +P + DLAFKL+RKKF+IEK H+PPE
Sbjct: 351 SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKFIIEKFHLPPE 410

Query: 173 LEETSEREQDDITATPSTA 117
           L+E+S +  + I+   S +
Sbjct: 411 LQESSAKPDNCISGLLSNS 429



 Score = 34.7 bits (76), Expect = 0.17
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 854 MKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDS 696
           ++IAWRY  L  V S   +    GH+F+L   +D+  +   K    TT W DS
Sbjct: 120 LRIAWRYNDLPLVNSEH-ATAKIGHHFNLMEQMDSMMLYNVK----TTLWDDS 167


>AE014134-925|AAF52255.1|  437|Drosophila melanogaster CG6907-PA
           protein.
          Length = 437

 Score =  136 bits (330), Expect = 3e-32
 Identities = 77/199 (38%), Positives = 118/199 (59%), Gaps = 3/199 (1%)
 Frame = -3

Query: 704 QDSTLS-WQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSD 528
           QDS L  +     +G L      +LLRN  E+ +  +  N+ R+ + SLGSP+W      
Sbjct: 243 QDSPLQVFHNPRYKGLLND--IQQLLRN--ESFVAGTKNNLCRVCLTSLGSPLWYD---- 294

Query: 527 DTEFQNYGRDLIMFMYYLRILIRDKNVAVFITIPSHLYE--DPIIMKKVLYSAHNAVRIE 354
               +++G DLI F+  L   +R+ N    IT+P HL    D  ++ K+      A+ +E
Sbjct: 295 ----EHFGEDLIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE 350

Query: 353 SFAGSEKETNPVYKDYHGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPE 174
           SFAGSE+ET+P +K+Y GL H+ K++A+ TL   +P + DLAFKL+RKKF+IEK H+PPE
Sbjct: 351 SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKFIIEKFHLPPE 410

Query: 173 LEETSEREQDDITATPSTA 117
           L+E+S +  + I+   S +
Sbjct: 411 LQESSAKPDNCISGLLSNS 429



 Score = 34.7 bits (76), Expect = 0.17
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 854 MKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDS 696
           ++IAWRY  L  V S   +    GH+F+L   +D+  +   K    TT W DS
Sbjct: 120 LRIAWRYNDLPLVNSEH-ATAKIGHHFNLMEQMDSMMLYNVK----TTLWDDS 167


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,832,623
Number of Sequences: 53049
Number of extensions: 822607
Number of successful extensions: 1963
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4188579408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)