Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n17
(868 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41559-3|AAC24262.1| 334|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AF324488-1|AAK49909.1| 314|Caenorhabditis elegans B0212.4-like ... 30 1.9
AF045639-4|AAV58895.1| 313|Caenorhabditis elegans Hypothetical ... 30 1.9
AF045639-3|AAL11098.1| 383|Caenorhabditis elegans Hypothetical ... 30 1.9
AF045639-2|AAC02568.2| 382|Caenorhabditis elegans Hypothetical ... 30 1.9
U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-link... 29 3.3
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 29 3.3
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 29 3.3
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 29 3.3
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 29 3.3
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 29 3.3
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 29 3.3
Z83246-3|CAB05843.2| 292|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine re... 28 7.5
Z81542-5|CAB04420.2| 433|Caenorhabditis elegans Hypothetical pr... 28 9.9
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 28 9.9
>U41559-3|AAC24262.1| 334|Caenorhabditis elegans Hypothetical
protein C26B2.6 protein.
Length = 334
Score = 60.9 bits (141), Expect = 1e-09
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 2/239 (0%)
Frame = -3
Query: 854 MKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTT 675
MKIAWRY + QV SS G +N + +D +++++ ++ + T TL
Sbjct: 113 MKIAWRYGNVKQVSSSLGPLSN-ENQYDFTKHVENPNVDVYAEKVFTLKGIYETLCQIVK 171
Query: 674 MRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIWMAMDSDDTEFQNYGRDL 495
KS N+LR+ + ++ I +D +F GR
Sbjct: 172 ENEAHTKSG------------GRGGPKKNLLRVVLKNIDMEI-----CEDYKF--LGR-- 210
Query: 494 IMFMYYLRILIRDKNVAVFITIPSHLYEDPIIMKKVLYSAHNA-VRIESFAGSEKETNPV 318
F+ LR L R + V+IT S + P ++L SA + +++ F +EK+
Sbjct: 211 --FLCCLRSLARSSYMIVYITANS--FRVPKPTWRILESAADTHIQLMPFDENEKKMFKH 266
Query: 317 YKDYHGLFHITKLTALYTLVPFVPPSLDLAFKL-KRKKFVIEKLHIPPELEETSEREQD 144
HG FH+ L L ++ PP LDL F+ RK F I +H+PP +E + Q+
Sbjct: 267 LGTAHGYFHLKSLPRLMSVGTHTPPILDLIFEASSRKGFQIRVMHLPPAFDEPAPGHQN 325
>AF324488-1|AAK49909.1| 314|Caenorhabditis elegans B0212.4-like
protein protein.
Length = 314
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 305 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 138
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 251 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 304
>AF045639-4|AAV58895.1| 313|Caenorhabditis elegans Hypothetical
protein B0212.4c protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 305 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 138
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 250 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 303
>AF045639-3|AAL11098.1| 383|Caenorhabditis elegans Hypothetical
protein B0212.4b protein.
Length = 383
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 305 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 138
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 320 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 373
>AF045639-2|AAC02568.2| 382|Caenorhabditis elegans Hypothetical
protein B0212.4a protein.
Length = 382
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 305 HGLFHITKLTALYTLVPFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQDDI 138
+G+ +T +Y+L P PP+L KL+++ V E L E E E+D+I
Sbjct: 319 YGVTLVTSSVVVYSLFPVAPPALSDYHKLEQQDDVAELL--KSSGVEDEEEEEDEI 372
>U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform d protein.
Length = 245
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 202 TNFFLFSLNAKSRLGGTNGTSVYSAVNFVM*NSPW 306
TN+F+FSL L G G VY+A F + N+ W
Sbjct: 40 TNYFIFSLAISDLLIGLEGIPVYTA--FYLNNNEW 72
>Z83246-3|CAB05843.2| 292|Caenorhabditis elegans Hypothetical
protein ZK795.2 protein.
Length = 292
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 257 PFVPPSLDLAFKLKRKKFVIEKLHIPPELEETSEREQ 147
P S+D K+ KF+ IP E ET+ERE+
Sbjct: 146 PKTVKSMDQLIKILEPKFMAPLSRIPDEYPETAEREE 182
>AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine
receptor, class z protein67 protein.
Length = 322
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 190 YTFHQNLKRRVRESRTI*LQRHRLLAVDSAKRISTFNSARCI*QFFVYFYFNAKKNVLRI 11
Y FH+ K R+ + T+ L + L + RIS A +F VYF+ +KN++ +
Sbjct: 82 YFFHRGHKNRI-STYTLILTSYALYLFNQVFRISII--ALSFERFLVYFFPTTEKNIILV 138
>Z81542-5|CAB04420.2| 433|Caenorhabditis elegans Hypothetical
protein F49A5.8 protein.
Length = 433
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 727 ILLFSIVSASMYLLKSKLCPKLVLLPNDDSTWLKPSYLQAIFIFSAS 867
ILL ++S M LLKS++ LP+D LKP + + + A+
Sbjct: 215 ILLIVLISYDMLLLKSRM--SFYWLPDDTRCILKPRLQRYVLVMPAN 259
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 694 VLSCQVVVPYWILLFSIVSASMYLLKSKLCPKLVLL--PNDDSTWLK 828
+ C V+P WILL + + ++K+++ + L P +D WL+
Sbjct: 763 IRKCPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLE 809
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,291
Number of Sequences: 27780
Number of extensions: 449541
Number of successful extensions: 1168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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