Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n15
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 35 0.071
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 35 0.093
03_02_0132 - 5808606-5808696,5808804-5808875,5809133-5809204,580... 35 0.093
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332 31 0.87
10_01_0316 + 3479574-3482679,3482766-3483127 31 1.1
10_01_0102 - 1244294-1245478 31 1.1
04_04_0881 + 29055724-29059197 30 2.0
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 30 2.7
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 29 3.5
11_06_0091 + 19967390-19969825 29 4.6
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 29 4.6
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 29 4.6
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353... 29 6.1
01_01_0361 + 2838979-2841745,2841897-2842285 29 6.1
10_01_0105 + 1287423-1289924 28 8.1
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 28 8.1
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686... 28 8.1
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789... 28 8.1
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 28 8.1
01_01_0490 + 3620523-3623403,3623524-3623996 28 8.1
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 35.1 bits (77), Expect = 0.071
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -2
Query: 577 IFTNKFDYKIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDIS 398
+FTNKF I L L+ L L S NS + + +Q + F + +
Sbjct: 413 LFTNKFTGSIPAELGELENL-TELDL-SVNSLTGPIPSSFGNLKQLTKLALFFNNLTGVI 470
Query: 397 GPDLG-CRKLMRIYLNTDTFSGQLPAYLT 314
P++G L + +NT++ G+LPA +T
Sbjct: 471 PPEIGNMTALQSLDVNTNSLHGELPATIT 499
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 34.7 bits (76), Expect = 0.093
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -2
Query: 445 QNETITNFVKKILDISGPDLGCRKLMRIY-LNTDTFSGQLPAYLTHYVNYPHKNL 284
QN +++N K++ + DLG +++ L+ + FSGQ+PA LT N H NL
Sbjct: 79 QNLSLSN--NKLVGVLPRDLGSMTSLQLLDLSNNMFSGQIPAELTKLANLGHLNL 131
>03_02_0132 -
5808606-5808696,5808804-5808875,5809133-5809204,
5809299-5809379,5809475-5809618,5809708-5809779,
5810027-5810140,5810684-5810755,5811462-5811609,
5812120-5812231
Length = 325
Score = 34.7 bits (76), Expect = 0.093
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = -2
Query: 571 TNKFDYKIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFV-KKILDISG 395
TN D K LNH+ ++N + +N+ + + + ++ I N K+ D+
Sbjct: 103 TNLLDLKRFNPLNHVNNDYSNY-RDLHNNKLTGPIPPQIGRLKHLRILNLRWNKLQDVLP 161
Query: 394 PDLG-CRKLMRIYLNTDTFSGQLPAYLTH 311
P++G +KL +YL+ + F G++P L +
Sbjct: 162 PEIGELKKLTHLYLSFNNFKGEIPVELAN 190
>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
Length = 524
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = -2
Query: 520 LFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTF 341
LF + + N + L +Y+ E+ E + +KK+ ++ GP C+ R++ F
Sbjct: 401 LFWIVELDMTNKVLRSLPTLYIQVEEEEEDDDEIKKVQEVQGPS-RCKAYKRVFHGEYFF 459
Query: 340 SGQLPAYL 317
+YL
Sbjct: 460 PSHFTSYL 467
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 382 CRKLMRIYLNTDTFSGQLPAYL 317
CR L+ +YLN++ F+G +PA++
Sbjct: 334 CRCLIMLYLNSNNFTGSIPAFI 355
>10_01_0102 - 1244294-1245478
Length = 394
Score = 31.1 bits (67), Expect = 1.1
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
Frame = -2
Query: 673 IKNFSLLGNEYHVLVSSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHLKR-----LFAN 509
+ N L + L + R L + ++ N+ I ++L L + L N
Sbjct: 170 LANLQSLSLSNNTLTGEIPRTLANLTNLATLQLYGNELSGPIPQKLCMLTKIQYLELSGN 229
Query: 508 LPAESYNSCVNDLTDMY-LYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQ 332
SC+++LT M LY QN+ IT + K + + L + L +TFSG+
Sbjct: 230 KLTGELPSCLSNLTKMKELYLHQNQ-ITGSIPKEIGMLA------NLQLLSLGNNTFSGE 282
Query: 331 LPAYLTHYVN 302
+P L + N
Sbjct: 283 IPTTLANLTN 292
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 385 GCRKLMRIYLNTDTFSGQLPAYL 317
G R+L +YL ++FSGQ+PA L
Sbjct: 414 GLRRLREVYLGGNSFSGQIPASL 436
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -2
Query: 415 KILDISGPDLGCRKLMRIYLNTDTFSGQLPAYL 317
KILDI + GC++LM + L+ F G+LP+++
Sbjct: 182 KILDIW--NTGCKQLMHLDLSQSKFHGRLPSWI 212
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 379 RKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 272
R L + L+ +TFSG +PA +T+ ++ + +L D N
Sbjct: 340 RDLQILRLSHNTFSGSIPAGITNLLSLQYLDLSDNN 375
>11_06_0091 + 19967390-19969825
Length = 811
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 385 GCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQNWKRF 260
G RK+ + ++ ++FSG P++L + N + D +W +F
Sbjct: 479 GMRKMSILRISNNSFSGNFPSFLQGWTNL---SFLDLSWNKF 517
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -2
Query: 418 KKILDISGPDLGCRKLMR-IYLNTDTFSGQLPAYLTH 311
++++ + P LG ++ +YL+T++F+G++P L H
Sbjct: 84 QRLVGVISPSLGNLTFLKFLYLDTNSFTGEIPLSLGH 120
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = -2
Query: 535 NHLKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDISGPDLGCRKLMRIYL 356
NHL L LP N +N LT++ + + + NF+ + + CRKL + +
Sbjct: 402 NHLDGL---LPTTIGN--MNSLTELIISENGLQGDLNFLSAVSN-------CRKLSVLCI 449
Query: 355 NTDTFSGQLPAYL 317
N++ F+G LP YL
Sbjct: 450 NSNRFTGILPDYL 462
>02_05_1280 -
35434165-35434392,35434639-35434800,35435241-35435372,
35436048-35436115,35436719-35437313
Length = 394
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 407 KYFFHKIGNGFVLFLVQIHVGEIIDTRIVRFRRQVGKQALEMIES 541
K+F +G GF ++ I GE + RI+ F +Q G +A+ +I +
Sbjct: 200 KWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQ-GPRAVCIISA 243
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 382 CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 272
C +L ++ ++ ++FSGQLP + + HK D N
Sbjct: 347 CSQLQQLVISDNSFSGQLPNSVVNLSTTLHKLYLDNN 383
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 364 IYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 272
++L + F+G +P +TH + NL D N
Sbjct: 550 LHLGHNMFNGDIPVNITHLTQLQYLNLADNN 580
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 604 RSKRVATTTPTRDIRFQEAKN 666
R R+ATT+P +++QE KN
Sbjct: 718 RPSRLATTSPAEPVKYQETKN 738
>04_01_0522 -
6865049-6865131,6865214-6865388,6865692-6865877,
6866489-6866599,6866678-6866890,6867446-6867553,
6867632-6867773,6867855-6868951,6871287-6871559
Length = 795
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Frame = -2
Query: 619 QRVLNDQLMCLLKDIFTNKF-DYKIKRRLNHLKRLFANLPAESYNSCVNDLTDMYLYKEQ 443
Q + D+++ D+ +KF +Y ++ L H + E +S + L+ + Q
Sbjct: 623 QSAVMDEIVERAFDLTEDKFGNYVVQHVLEHGR-------PEERSSIIQKLSGQVVNLSQ 675
Query: 442 NETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQNW 269
+ +N V+K L PD + I + TF G + +YV CD +
Sbjct: 676 QKYASNVVEKCLSFGTPDEREGLIREIVSSGQTFQGLMKDQFGNYVVQRILQTCDDKF 733
>03_06_0662 +
35377974-35378270,35378354-35378623,35378795-35378973,
35380073-35380116,35380295-35380384,35380472-35380588,
35380679-35380803,35380883-35381155,35381253-35381386,
35381518-35381604,35381714-35381831
Length = 577
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 689 EGSFHNAHVDKKHVERQRGCGYFNAVVGILVDAVCACY 802
E H +DK+HVE GY V +L D + Y
Sbjct: 263 EAPVHRGGLDKEHVEYLNSLGYPKPPVNVLDDGLILAY 300
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -2
Query: 457 LYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCD 278
LY + N I N ++ G ++ + L+++ FSGQ+P + H++ NL
Sbjct: 573 LYLQNNSFIGNIPSSFSEMKGLEI-------LDLSSNNFSGQIPKFFGHFLTLYDLNLSY 625
Query: 277 QNW 269
N+
Sbjct: 626 NNF 628
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 394 PDLG-CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQN 272
P+LG C L IYL + SG +PA L N + L N
Sbjct: 268 PELGRCTSLENIYLYENALSGSIPAQLGGLANLKNLLLWQNN 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,961,093
Number of Sequences: 37544
Number of extensions: 370600
Number of successful extensions: 1097
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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